Additional file 2: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Additional file 2: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information supporting effector prediction, orthology, functional annotations, mutations and PAV acr...

Additional file 2: File S1. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Complete transcriptome assembly of P. citri reassembled from raw reads data [33]. (Format: FASTA, ex...

Additional file 5: of Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

Margarida Rocheta (272645)
João Coito (3404027)
Miguel Ramos (3404030)
Luísa Carvalho (3404024)
Jörg Becker (3404033)
Pablo Carbonell-Bejerano (154337)
Sara Amâncio (3404036)

October 2016

Distribution in functional categories of differentially expressed genes in growth room and field exp...

Additional file 4: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

DEGs detected with absolute FC > 2 and adjusted p < 0.01 only in the response to the feeding of Lon...

Additional file 6: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

GSA results for the DEGs detected with an adjusted p < 0.01 in response to the feeding of London mi...

Additional file 7: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

List of DEGs and their FC values associated with the hormone and phenylpropanoid metabolism and defe...

RESEARCH ARTICLE Open Access Comparative genome-wide transcriptome

Jose Díaz-riquelme
Vladimir Zhurov
Cristina Rioja
Ignacio Pérez-moreno
Rafael Torres-pérez
Jérôme Grimplet
Pablo Carbonell-bejerano
Sabina Bajda
Thomas Van Leeuwen
José Miguel Martínez-zapater
Miodrag Grbic
Vojislava Grbic

August 2016

analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, ...

Comparative genome-wide transcriptome analysis of vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, tetranyhus urticae

Díaz-Riquelme, José
Rioja, Cristina
Torres-Pérez, Rafael
Grimplet, Jérôme
Carbonell-Bejerano, Pablo
Martínez-Zapater, José M.
Grbić, Miodrag
Grbić, Vojislava

March 2017

Díaz-Riquelme, José et al.[Background] The two-spotted spider mite, Tetranychus urticae, is an extre...

Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Díaz-Riquelme, J.
Zhurov, V.
Rioja, C.
Pérez-Moreno, I.
Torres-Pérez, R.
Grimplet, J.
Carbonell-Bejerano, P.
Bajda, S.
Van Leeuwen, T.
Martínez-Zapater, J.M.
Grbic, M.
Grbic, V.

January 2016

Background: The two-spotted spider mite, Tetranychus urticae, is an extreme generalist plant pest. E...

Additional file 2: of Genetic identification of SNP markers linked to a new grape phylloxera resistant locus in Vitis cinerea for marker-assisted selection

Harley Smith (5032259)
Catherine Clarke (265231)
Brady Smith (6100784)
Bernadette Carmody (6100787)
Mark Thomas (83380)
Peter Clingeleffer (6100790)
Kevin Powell (6100793)

December 2018

Evaluation of G4 grape phylloxera resistance. For G4 phylloxera resistance, a graphic representation...

Additional file 2: of High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays

Marie-CĂŠcile Dufour (3456206)
NoĂŤl Magnin (3456209)
Bernard Dumas (40050)
Sophie Vergnes (3456191)
Marie-France Corio-Costet (103854)

November 2016

Protein sequence homology/orthology between Vitis and Arabidopsis and/or Malus domestica - Solanum l...

Additional file 1: of Genetic identification of SNP markers linked to a new grape phylloxera resistant locus in Vitis cinerea for marker-assisted selection

Harley Smith (5032259)
Catherine Clarke (265231)
Brady Smith (6100784)
Bernadette Carmody (6100787)
Mark Thomas (83380)
Peter Clingeleffer (6100790)
Kevin Powell (6100793)

December 2018

Evaluation of G1 grape phylloxera resistance. The average number of G1 nodosities and insects were g...

Additional file 1: of High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays

Marie-Cécile Dufour (3456185)
Noël Magnin (3456188)
Bernard Dumas (40050)
Sophie Vergnes (3456191)
Marie-France Corio-Costet (103854)

November 2016

Original sequences and/or references used to find new candidate genes involved in grapevine defenses...

Additional file 2: of Identification of the defense-related gene VdWRKY53 from the wild grapevine Vitis davidii using RNA sequencing and ectopic expression analysis in Arabidopsis

Ying Zhang (40767)
Jia-Long Yao (5106608)
Hu Feng (6641357)
Jianfu Jiang (3543578)
Xiucai Fan (3543581)
Yun-Fei Jia (6641360)
Ran Wang (169166)
Chonghuai Liu (3488576)

April 2019

Number of DEGs between V. davidii and V. vinifera in different KEGG pathways detected at different i...

Additional file 4: of Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

Margarida Rocheta (272645)
João Coito (3404027)
Miguel Ramos (3404030)
Luísa Carvalho (3404024)
Jörg Becker (3404033)
Pablo Carbonell-Bejerano (154337)
Sara Amâncio (3404036)

October 2016

Genes exclusive and shared between field and growth room controlled stress treatments. (PDF 157 kb

Additional file 2: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information supporting effector prediction, orthology, functional annotations, mutations and PAV acr...

Additional file 2: File S1. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Complete transcriptome assembly of P. citri reassembled from raw reads data [33]. (Format: FASTA, ex...

Additional file 5: of Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

Margarida Rocheta (272645)
João Coito (3404027)
Miguel Ramos (3404030)
Luísa Carvalho (3404024)
Jörg Becker (3404033)
Pablo Carbonell-Bejerano (154337)
Sara Amâncio (3404036)

October 2016

Distribution in functional categories of differentially expressed genes in growth room and field exp...

Additional file 4: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

DEGs detected with absolute FC > 2 and adjusted p < 0.01 only in the response to the feeding of Lon...

Additional file 6: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

GSA results for the DEGs detected with an adjusted p < 0.01 in response to the feeding of London mi...

Additional file 7: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Jose Díaz-Riquelme (3529493)
Vladimir Zhurov (126731)
Cristina Rioja (277145)
Ignacio Pérez-Moreno (3529490)
Rafael Torres-Pérez (3450596)
Jérôme Grimplet (3450590)
Pablo Carbonell-Bejerano (154337)
Sabina Bajda (3452678)
Thomas Van Leeuwen (364016)
José Martínez-Zapater (3450599)
Miodrag Grbic (3529496)
Vojislava Grbic (143333)

January 2016

List of DEGs and their FC values associated with the hormone and phenylpropanoid metabolism and defe...

RESEARCH ARTICLE Open Access Comparative genome-wide transcriptome

Jose Díaz-riquelme
Vladimir Zhurov
Cristina Rioja
Ignacio Pérez-moreno
Rafael Torres-pérez
Jérôme Grimplet
Pablo Carbonell-bejerano
Sabina Bajda
Thomas Van Leeuwen
José Miguel Martínez-zapater
Miodrag Grbic
Vojislava Grbic

August 2016

analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, ...

Comparative genome-wide transcriptome analysis of vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, tetranyhus urticae

Díaz-Riquelme, José
Rioja, Cristina
Torres-Pérez, Rafael
Grimplet, Jérôme
Carbonell-Bejerano, Pablo
Martínez-Zapater, José M.
Grbić, Miodrag
Grbić, Vojislava

March 2017

Díaz-Riquelme, José et al.[Background] The two-spotted spider mite, Tetranychus urticae, is an extre...

Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Díaz-Riquelme, J.
Zhurov, V.
Rioja, C.
Pérez-Moreno, I.
Torres-Pérez, R.
Grimplet, J.
Carbonell-Bejerano, P.
Bajda, S.
Van Leeuwen, T.
Martínez-Zapater, J.M.
Grbic, M.
Grbic, V.

January 2016

Background: The two-spotted spider mite, Tetranychus urticae, is an extreme generalist plant pest. E...

Additional file 2: of Genetic identification of SNP markers linked to a new grape phylloxera resistant locus in Vitis cinerea for marker-assisted selection

Harley Smith (5032259)
Catherine Clarke (265231)
Brady Smith (6100784)
Bernadette Carmody (6100787)
Mark Thomas (83380)
Peter Clingeleffer (6100790)
Kevin Powell (6100793)

December 2018

Evaluation of G4 grape phylloxera resistance. For G4 phylloxera resistance, a graphic representation...

Additional file 2: of High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays

Marie-CĂŠcile Dufour (3456206)
NoĂŤl Magnin (3456209)
Bernard Dumas (40050)
Sophie Vergnes (3456191)
Marie-France Corio-Costet (103854)

November 2016

Protein sequence homology/orthology between Vitis and Arabidopsis and/or Malus domestica - Solanum l...

Additional file 1: of Genetic identification of SNP markers linked to a new grape phylloxera resistant locus in Vitis cinerea for marker-assisted selection

Harley Smith (5032259)
Catherine Clarke (265231)
Brady Smith (6100784)
Bernadette Carmody (6100787)
Mark Thomas (83380)
Peter Clingeleffer (6100790)
Kevin Powell (6100793)

December 2018

Evaluation of G1 grape phylloxera resistance. The average number of G1 nodosities and insects were g...

Additional file 1: of High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays

Marie-Cécile Dufour (3456185)
Noël Magnin (3456188)
Bernard Dumas (40050)
Sophie Vergnes (3456191)
Marie-France Corio-Costet (103854)

November 2016

Original sequences and/or references used to find new candidate genes involved in grapevine defenses...

Additional file 2: of Identification of the defense-related gene VdWRKY53 from the wild grapevine Vitis davidii using RNA sequencing and ectopic expression analysis in Arabidopsis

Ying Zhang (40767)
Jia-Long Yao (5106608)
Hu Feng (6641357)
Jianfu Jiang (3543578)
Xiucai Fan (3543581)
Yun-Fei Jia (6641360)
Ran Wang (169166)
Chonghuai Liu (3488576)

April 2019

Number of DEGs between V. davidii and V. vinifera in different KEGG pathways detected at different i...

Additional file 4: of Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

Margarida Rocheta (272645)
João Coito (3404027)
Miguel Ramos (3404030)
Luísa Carvalho (3404024)
Jörg Becker (3404033)
Pablo Carbonell-Bejerano (154337)
Sara Amâncio (3404036)

October 2016

Genes exclusive and shared between field and growth room controlled stress treatments. (PDF 157 kb

Additional file 2: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information supporting effector prediction, orthology, functional annotations, mutations and PAV acr...

Additional file 2: File S1. of Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Sabina Bajda (3452678)
Wannes Dermauw (423136)
Robert Greenhalgh (3452675)
Ralf Nauen (841045)
Luc Tirry (724009)
Richard Clark (45325)
Thomas Van Leeuwen (364016)

November 2015

Complete transcriptome assembly of P. citri reassembled from raw reads data [33]. (Format: FASTA, ex...

Additional file 5: of Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions

Margarida Rocheta (272645)
João Coito (3404027)
Miguel Ramos (3404030)
Luísa Carvalho (3404024)
Jörg Becker (3404033)
Pablo Carbonell-Bejerano (154337)
Sara Amâncio (3404036)

October 2016

Distribution in functional categories of differentially expressed genes in growth room and field exp...

Additional file 2: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Abstract

Extracted data

Additional file 2: of Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Abstract

Extracted data

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