<p>The genes are grouped into the corresponding pathways (<a href="http://www.kegg.jp/kegg-bin/show_organism?org=pau" target="_blank">http://www.kegg.jp/kegg-bin/show_organism?org=pau</a>). For each group the overall behavior was summarized by the averaged log<sub>2</sub> fold change of its significantly modulated members. The column denotes A-30 versus P and B-96 versus P, respectively. The color code shown in the scale at the right denotes log<sub>2</sub>-fold changes. Red indicates an overall decrease and green indicates an overall increase in the mRNA levels of genes in a particular pathway. The numbers of genes within each group are indicated by the numbers given in parenthesis.</p
<p>(A) Transcripts with differential expression levels under different experimental treatments compa...
<p>The Cluster analysis was performed using Hierarchical cluster analysis. Rows represent differenti...
Using the "Custum Analysis" feature of Metascape (accessed; 23/08/15) , an enrichment analysis was ...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
a<p>The number of genes mapped to each KEGG pathway in the whole transcriptome.</p>b<p>The number of...
Background Differential expression analysis on the basis of RNA-Seq count data has become a standard...
Using current experimental techniques in systems biology, it is possible to capture considerable qua...
<p>Ingenuity Pathways Analysis (IPA) of biological functions for transcripts (<b>A</b>) upregulated ...
<p>This dataset contains extreme transcript abundance variation within- and between-conditions. In t...
<p>The significant pathways: “p53” (A) and “cell cycle” (B) of regulated genes are demonstrated. Dif...
<p>Venn diagrams illustrating the overlap between upregulated (A) and downregulated (B) genes in the...
<p>Pathway enrichment analysis was conducted using metagene-specific transcripts. Significant biolog...
<p>(A) The number of significantly differentially expressed genes (not all genes) in the PL-EL compa...
<p>Distributions of pathway BMD-mean values for RNA-seq (top), microarray (center) and qPCR (bottom)...
Figure S4. Effect size analysis of DAGs. Estimated effect size of differentially abundant genes (DAG...
<p>(A) Transcripts with differential expression levels under different experimental treatments compa...
<p>The Cluster analysis was performed using Hierarchical cluster analysis. Rows represent differenti...
Using the "Custum Analysis" feature of Metascape (accessed; 23/08/15) , an enrichment analysis was ...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
a<p>The number of genes mapped to each KEGG pathway in the whole transcriptome.</p>b<p>The number of...
Background Differential expression analysis on the basis of RNA-Seq count data has become a standard...
Using current experimental techniques in systems biology, it is possible to capture considerable qua...
<p>Ingenuity Pathways Analysis (IPA) of biological functions for transcripts (<b>A</b>) upregulated ...
<p>This dataset contains extreme transcript abundance variation within- and between-conditions. In t...
<p>The significant pathways: “p53” (A) and “cell cycle” (B) of regulated genes are demonstrated. Dif...
<p>Venn diagrams illustrating the overlap between upregulated (A) and downregulated (B) genes in the...
<p>Pathway enrichment analysis was conducted using metagene-specific transcripts. Significant biolog...
<p>(A) The number of significantly differentially expressed genes (not all genes) in the PL-EL compa...
<p>Distributions of pathway BMD-mean values for RNA-seq (top), microarray (center) and qPCR (bottom)...
Figure S4. Effect size analysis of DAGs. Estimated effect size of differentially abundant genes (DAG...
<p>(A) Transcripts with differential expression levels under different experimental treatments compa...
<p>The Cluster analysis was performed using Hierarchical cluster analysis. Rows represent differenti...
Using the "Custum Analysis" feature of Metascape (accessed; 23/08/15) , an enrichment analysis was ...