Additional file 1: of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Additional file 4: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S4. Nitrogen fixation protein similarities between M. amorphae CCNWGS0123 and other four Mesor...

Additional file 4: of Phenotypic and genetic characterization of tomato mutants provides new insights into leaf development and its relationship to agronomic traits

Marybel Jáquez-Gutiérrez (6590693)
Alejandro Atarés (234316)
Benito Pineda (234303)
Pilar Angarita (6590696)
Carlos Ribelles (6590699)
Begoña García-Sogo (234324)
Jorge Sánchez-López (6590702)
Carmen Capel (4227619)
Fernando Yuste-Lisbona (6590705)
Rafael Lozano (234333)
Vicente Moreno (234329)

April 2019

Table S2. Number of T-DNA inserts with a functional nptII marker gene in tomato mutants altered in l...

Additional file 2: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Table S2. Summary of sequencing data for each sample. Valid data were obtained after removing adapto...

Additional file 2: Table S1. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Chromosomal locations of NF11217 TAIL-PCR FSTs recovered from R0, R1 and BC1F2 generations. (XLS 53Â...

Additional file 9: Table S7. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF11217 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 48Â ...

Additional file 10: Table S8. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF10547 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 33Â ...

Additional file 5: Table S3. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF11217 b...

Additional file 8: Table S6. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 by...

Additional file 7: Table S5. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 b...

Additional file 14: Figure S2. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of Mtnin-16â˛s encoded sequence with that of Lotus japonicus NIN and M. truncatula NIN. ...

Additional file 1: Figure S1. of Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Humberto Peralta (3543215)
Alejandro Aguilar (531028)
Rafael Díaz (3056607)
Yolanda Mora (129646)
Gabriel Martínez-Batallar (3543221)
Emmanuel Salazar (3543227)
Carmen Vargas-Lagunas (3543218)
Esperanza Martínez (3543224)
Sergio Encarnación (80183)
Lourdes Girard (2002)
Jaime Mora (3543212)

September 2016

Plasmids of S. americanum strains visualized by pulsed field gel electrophoresis (PFGE). 1, CCGM7, 2...

Additional file 1: Table S1. of Overexpression of MfPIP2-7 from Medicago falcata promotes cold tolerance and growth under NO3 − deficiency in transgenic tobacco plants

Chunliu Zhuo (3432683)
Ting Wang (16292)
Zhenfei Guo (3432686)
Shaoyun Lu (3432689)

June 2016

Primers for quantitative real-time PCR. Figure S1. Phylogenetic analysis of MfPIP2-7 in falcata with...

Additional file 4: Table S4. of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

Natalija Hohnjec (3450776)
Lisa Czaja-Hasse (3450782)
Claudia Hogekamp (3450779)
Helge Küster (416276)

November 2015

Ten subsets from Additional file 3: Table S3, where genes activated at least 1.5-fold (p < 0.05) in ...

Additional file 3: Table S2. of Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Humberto Peralta (3543215)
Alejandro Aguilar (531028)
Rafael Díaz (3056607)
Yolanda Mora (129646)
Gabriel Martínez-Batallar (3543221)
Emmanuel Salazar (3543227)
Carmen Vargas-Lagunas (3543218)
Esperanza Martínez (3543224)
Sergio Encarnación (80183)
Lourdes Girard (2002)
Jaime Mora (3543212)

September 2016

Average nucleotide identity (ANIm) among the genomes of selected Sinorhizobium and Rhizobium strains...

Additional file 5: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S3. dCAPS marker for molecular identification. (A) DNA sequences of wild type and mutant. The...

Additional file 4: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S4. Nitrogen fixation protein similarities between M. amorphae CCNWGS0123 and other four Mesor...

Additional file 4: of Phenotypic and genetic characterization of tomato mutants provides new insights into leaf development and its relationship to agronomic traits

Marybel Jáquez-Gutiérrez (6590693)
Alejandro Atarés (234316)
Benito Pineda (234303)
Pilar Angarita (6590696)
Carlos Ribelles (6590699)
Begoña García-Sogo (234324)
Jorge Sánchez-López (6590702)
Carmen Capel (4227619)
Fernando Yuste-Lisbona (6590705)
Rafael Lozano (234333)
Vicente Moreno (234329)

April 2019

Table S2. Number of T-DNA inserts with a functional nptII marker gene in tomato mutants altered in l...

Additional file 2: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Table S2. Summary of sequencing data for each sample. Valid data were obtained after removing adapto...

Additional file 2: Table S1. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Chromosomal locations of NF11217 TAIL-PCR FSTs recovered from R0, R1 and BC1F2 generations. (XLS 53Â...

Additional file 9: Table S7. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF11217 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 48Â ...

Additional file 10: Table S8. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF10547 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 33Â ...

Additional file 5: Table S3. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF11217 b...

Additional file 8: Table S6. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 by...

Additional file 7: Table S5. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 b...

Additional file 14: Figure S2. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of Mtnin-16â˛s encoded sequence with that of Lotus japonicus NIN and M. truncatula NIN. ...

Additional file 1: Figure S1. of Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Humberto Peralta (3543215)
Alejandro Aguilar (531028)
Rafael Díaz (3056607)
Yolanda Mora (129646)
Gabriel Martínez-Batallar (3543221)
Emmanuel Salazar (3543227)
Carmen Vargas-Lagunas (3543218)
Esperanza Martínez (3543224)
Sergio Encarnación (80183)
Lourdes Girard (2002)
Jaime Mora (3543212)

September 2016

Plasmids of S. americanum strains visualized by pulsed field gel electrophoresis (PFGE). 1, CCGM7, 2...

Additional file 1: Table S1. of Overexpression of MfPIP2-7 from Medicago falcata promotes cold tolerance and growth under NO3 − deficiency in transgenic tobacco plants

Chunliu Zhuo (3432683)
Ting Wang (16292)
Zhenfei Guo (3432686)
Shaoyun Lu (3432689)

June 2016

Primers for quantitative real-time PCR. Figure S1. Phylogenetic analysis of MfPIP2-7 in falcata with...

Additional file 4: Table S4. of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

Natalija Hohnjec (3450776)
Lisa Czaja-Hasse (3450782)
Claudia Hogekamp (3450779)
Helge Küster (416276)

November 2015

Ten subsets from Additional file 3: Table S3, where genes activated at least 1.5-fold (p < 0.05) in ...

Additional file 3: Table S2. of Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Humberto Peralta (3543215)
Alejandro Aguilar (531028)
Rafael Díaz (3056607)
Yolanda Mora (129646)
Gabriel Martínez-Batallar (3543221)
Emmanuel Salazar (3543227)
Carmen Vargas-Lagunas (3543218)
Esperanza Martínez (3543224)
Sergio Encarnación (80183)
Lourdes Girard (2002)
Jaime Mora (3543212)

September 2016

Average nucleotide identity (ANIm) among the genomes of selected Sinorhizobium and Rhizobium strains...

Additional file 5: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Figure S3. dCAPS marker for molecular identification. (A) DNA sequences of wild type and mutant. The...

Additional file 4: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S4. Nitrogen fixation protein similarities between M. amorphae CCNWGS0123 and other four Mesor...

Additional file 4: of Phenotypic and genetic characterization of tomato mutants provides new insights into leaf development and its relationship to agronomic traits

Marybel Jáquez-Gutiérrez (6590693)
Alejandro Atarés (234316)
Benito Pineda (234303)
Pilar Angarita (6590696)
Carlos Ribelles (6590699)
Begoña García-Sogo (234324)
Jorge Sánchez-López (6590702)
Carmen Capel (4227619)
Fernando Yuste-Lisbona (6590705)
Rafael Lozano (234333)
Vicente Moreno (234329)

April 2019

Table S2. Number of T-DNA inserts with a functional nptII marker gene in tomato mutants altered in l...

Additional file 2: of A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice

Zhiming Yu (395119)
Lixiang Dong (4904425)
Zhifang Jiang (4904431)
Keke Yi (477808)
Jianhua Zhang (6347)
Zhongchen Zhang (470542)
Zhenxing Zhu (509266)
Yuhuan Wu (3815479)
Maojun Xu (447937)
Jun Ni (68173)

October 2018

Table S2. Summary of sequencing data for each sample. Valid data were obtained after removing adapto...

Additional file 1: of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Abstract

Extracted data

Additional file 1: of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Abstract

Extracted data

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