Additional file 14: Figure S2. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Additional file 15: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

Sovanna Tan (6700676)
Frédéric Debellé (681781)
Pascal Gamas (231748)
Florian Frugier (504628)
Mathias Brault (6700679)

May 2019

Identification of predicted cytokinin response cis-elements in the promoter of M. truncatula RRA gen...

Identifying Tnt1 transposon insertions in the NPF1B gene of Medicago truncatula through PCR screening

Bardsley, Katherine Anne

March 2019

The NPF1B gene is retained in many species that are able to perform root symbioses, mycorrhizae and ...

Additional file 16: Figure S10. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Atul Upadhyay (3470039)
Anita Chacko (3470030)
A. Gandhimathi (810114)
Pritha Ghosh (807386)
K. Harini (777090)
Agnel Joseph (3470051)
Adwait Joshi (3470069)
Snehal Karpe (3470024)
Swati Kaushik (195121)
Nagesh Kuravadi (3470066)
Chandana Lingu (3470021)
J. Mahita (3470054)
Ramya Malarini (3470042)
Sony Malhotra (519056)
Manoharan Malini (3470063)
Oommen Mathew (3470015)
Eshita Mutt (378233)
Mahantesha Naika (3470048)
Sathyanarayanan Nitish (3470060)
Shaik Pasha (3470057)
Upadhyayula Raghavender (3470036)
Anantharamanan Rajamani (3470012)
S Shilpa (3470018)
Prashant Shingate (146643)
Heikham Singh (3470033)
Anshul Sukhwal (3470072)
Margaret Sunitha (3470027)
Manojkumar Sumathi (3470045)
S. Ramaswamy (367317)
Malali Gowda (3132714)
Ramanathan Sowdhamini (5068)

August 2015

Circular representation of O. tenuiflorum metabolite-related genes mapped onto Medicago tranculata p...

Additional file 9: Table S7. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF11217 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 48Â ...

Additional file 1: of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of sequences of all NF11217 flanking sequence tags (FSTs) obtained from R0, R1 and BC1 F2 gener...

Additional file 8: Table S6. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 by...

Additional file 7: Table S5. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 b...

Additional file 2: Table S1. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Chromosomal locations of NF11217 TAIL-PCR FSTs recovered from R0, R1 and BC1F2 generations. (XLS 53Â...

Additional file 10: Table S8. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF10547 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 33Â ...

Additional file 5: Table S3. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF11217 b...

Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Veerappan, Vijaykumar
Jani, Mehul
Kadel, Khem
Troiani, Taylor
Gale, Ronny
Mayes, Tyler
Shulaev, Elena
Wen, Jiangqi
Mysore, Kirankumar S.
Azad, Rajeev K.
Dickstein, Rebecca

February 2016

This article demonstrates that whole genome sequencing is an efficient approach for identification o...

Genetic Analysis of Medicago Truncatula Plants with a Defective Mtire Gene

Alexis, Naudin

August 2015

Leguminous plants are able to fix nitrogen by establishing a symbiotic relationship with soil dwelli...

ISBN 978-88-900622-9-2 Poster Abstract – 7.45 SCREENING OF MEDICAGO TRUNCATULA COLLECTIONS BASED ON

Tnt Mutagenesis

August 2015

Tnt1 mutagenesis, Medicago truncatula, leaf, tannin Medicago truncatula is a main model system for l...

Additional file 4: Table S4. of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

Natalija Hohnjec (3450776)
Lisa Czaja-Hasse (3450782)
Claudia Hogekamp (3450779)
Helge Küster (416276)

November 2015

Ten subsets from Additional file 3: Table S3, where genes activated at least 1.5-fold (p < 0.05) in ...

Forward Genetic Characterization of Medicago Truncatula Tnt1 Insertion Mutants Defective in Nodule Development and Symbiotic Nitrogen Fixation

Kadel, Khem L.

May 2015

Legumes are unique plants because they form special structures “nodules”, via symbiotic relationship...

Additional file 15: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

Sovanna Tan (6700676)
Frédéric Debellé (681781)
Pascal Gamas (231748)
Florian Frugier (504628)
Mathias Brault (6700679)

May 2019

Identification of predicted cytokinin response cis-elements in the promoter of M. truncatula RRA gen...

Identifying Tnt1 transposon insertions in the NPF1B gene of Medicago truncatula through PCR screening

Bardsley, Katherine Anne

March 2019

The NPF1B gene is retained in many species that are able to perform root symbioses, mycorrhizae and ...

Additional file 16: Figure S10. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Atul Upadhyay (3470039)
Anita Chacko (3470030)
A. Gandhimathi (810114)
Pritha Ghosh (807386)
K. Harini (777090)
Agnel Joseph (3470051)
Adwait Joshi (3470069)
Snehal Karpe (3470024)
Swati Kaushik (195121)
Nagesh Kuravadi (3470066)
Chandana Lingu (3470021)
J. Mahita (3470054)
Ramya Malarini (3470042)
Sony Malhotra (519056)
Manoharan Malini (3470063)
Oommen Mathew (3470015)
Eshita Mutt (378233)
Mahantesha Naika (3470048)
Sathyanarayanan Nitish (3470060)
Shaik Pasha (3470057)
Upadhyayula Raghavender (3470036)
Anantharamanan Rajamani (3470012)
S Shilpa (3470018)
Prashant Shingate (146643)
Heikham Singh (3470033)
Anshul Sukhwal (3470072)
Margaret Sunitha (3470027)
Manojkumar Sumathi (3470045)
S. Ramaswamy (367317)
Malali Gowda (3132714)
Ramanathan Sowdhamini (5068)

August 2015

Circular representation of O. tenuiflorum metabolite-related genes mapped onto Medicago tranculata p...

Additional file 9: Table S7. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF11217 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 48Â ...

Additional file 1: of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of sequences of all NF11217 flanking sequence tags (FSTs) obtained from R0, R1 and BC1 F2 gener...

Additional file 8: Table S6. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of low confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 by...

Additional file 7: Table S5. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF10547 b...

Additional file 2: Table S1. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Chromosomal locations of NF11217 TAIL-PCR FSTs recovered from R0, R1 and BC1F2 generations. (XLS 53Â...

Additional file 10: Table S8. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

Comparison of NF10547 high confidence Tnt1 insertion loci identified from WGS vs TAIL-PCR. (XLS 33Â ...

Additional file 5: Table S3. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Vijaykumar Veerappan (1861978)
Mehul Jani (3415130)
Khem Kadel (3415115)
Taylor Troiani (3415121)
Ronny Gale (3415136)
Tyler Mayes (3415133)
Elena Shulaev (3415127)
Jiangqi Wen (612044)
Kirankumar Mysore (3415118)
Rajeev Azad (3415139)
Rebecca Dickstein (3415124)

February 2016

List of high confidence Tnt1 insertion loci and its supporting reads/nodes identified from NF11217 b...

Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Veerappan, Vijaykumar
Jani, Mehul
Kadel, Khem
Troiani, Taylor
Gale, Ronny
Mayes, Tyler
Shulaev, Elena
Wen, Jiangqi
Mysore, Kirankumar S.
Azad, Rajeev K.
Dickstein, Rebecca

February 2016

This article demonstrates that whole genome sequencing is an efficient approach for identification o...

Genetic Analysis of Medicago Truncatula Plants with a Defective Mtire Gene

Alexis, Naudin

August 2015

Leguminous plants are able to fix nitrogen by establishing a symbiotic relationship with soil dwelli...

ISBN 978-88-900622-9-2 Poster Abstract – 7.45 SCREENING OF MEDICAGO TRUNCATULA COLLECTIONS BASED ON

Tnt Mutagenesis

August 2015

Tnt1 mutagenesis, Medicago truncatula, leaf, tannin Medicago truncatula is a main model system for l...

Additional file 4: Table S4. of Pre-announcement of symbiotic guests: transcriptional reprogramming by mycorrhizal lipochitooligosaccharides shows a strict co-dependency on the GRAS transcription factors NSP1 and RAM1

Natalija Hohnjec (3450776)
Lisa Czaja-Hasse (3450782)
Claudia Hogekamp (3450779)
Helge Küster (416276)

November 2015

Ten subsets from Additional file 3: Table S3, where genes activated at least 1.5-fold (p < 0.05) in ...

Forward Genetic Characterization of Medicago Truncatula Tnt1 Insertion Mutants Defective in Nodule Development and Symbiotic Nitrogen Fixation

Kadel, Khem L.

May 2015

Legumes are unique plants because they form special structures “nodules”, via symbiotic relationship...

Additional file 15: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

Sovanna Tan (6700676)
Frédéric Debellé (681781)
Pascal Gamas (231748)
Florian Frugier (504628)
Mathias Brault (6700679)

May 2019

Identification of predicted cytokinin response cis-elements in the promoter of M. truncatula RRA gen...

Identifying Tnt1 transposon insertions in the NPF1B gene of Medicago truncatula through PCR screening

Bardsley, Katherine Anne

March 2019

The NPF1B gene is retained in many species that are able to perform root symbioses, mycorrhizae and ...

Additional file 16: Figure S10. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Atul Upadhyay (3470039)
Anita Chacko (3470030)
A. Gandhimathi (810114)
Pritha Ghosh (807386)
K. Harini (777090)
Agnel Joseph (3470051)
Adwait Joshi (3470069)
Snehal Karpe (3470024)
Swati Kaushik (195121)
Nagesh Kuravadi (3470066)
Chandana Lingu (3470021)
J. Mahita (3470054)
Ramya Malarini (3470042)
Sony Malhotra (519056)
Manoharan Malini (3470063)
Oommen Mathew (3470015)
Eshita Mutt (378233)
Mahantesha Naika (3470048)
Sathyanarayanan Nitish (3470060)
Shaik Pasha (3470057)
Upadhyayula Raghavender (3470036)
Anantharamanan Rajamani (3470012)
S Shilpa (3470018)
Prashant Shingate (146643)
Heikham Singh (3470033)
Anshul Sukhwal (3470072)
Margaret Sunitha (3470027)
Manojkumar Sumathi (3470045)
S. Ramaswamy (367317)
Malali Gowda (3132714)
Ramanathan Sowdhamini (5068)

August 2015

Circular representation of O. tenuiflorum metabolite-related genes mapped onto Medicago tranculata p...

Additional file 14: Figure S2. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Abstract

Extracted data

Additional file 14: Figure S2. of Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing

Abstract

Extracted data

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