Additional file 10: Table S7. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Additional file 5: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

Sana Khan (3626855)
Swati Upadhyay (3626858)
Feroz Khan (462714)
Sudeep Tandon (653852)
Rakesh Shukla (709813)
Sumit Ghosh (464456)
Vikrant Gupta (398109)
Suchitra Banerjee (3626852)
Laiq ur Rahman (1383300)

January 2017

List of tissue specific unigenes assigned to KEGG pathway with their KEGG IDs and Annotation for PYT...

Additional file 7: of Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng

Le Xue (5058113)
Zilong He (5830418)
Xiaochun Bi (6711887)
Wei Xu (28953)
Ting Wei (113015)
Shuangxiu Wu (644349)
Songnian Hu (6480)

May 2019

Figure S2. Saturation curve of transcriptome sequencing data of each samples of P. ginseng using BWA...

Additional file 1 of Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734

Arburon Sulja (14071920)
Joël F. Pothier (12491626)
Jochen Blom (104512)
Chiaraluce Moretti (9075053)
Roberto Buonaurio (14071923)
Fabio Rezzonico (213623)
Theo H. M. Smits (11233824)

November 2022

Additional file 1: Text S1. Metabolic versatility in Pantoea agglomerans DAPP-PG 734. Table S1. Anti...

Additional file 9: Table S6. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

405 unigenes were significantly down-regulated (log2-FC ≤ -1, q-value < 0.05, TMM-normalized FPKM > ...

Additional file 5: Table S3. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0. 05, TMM-normalized F...

Additional file 3: Table S1. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Sixty-nine unigenes were significantly up-regulated (log2-FC ≥1, q-value < 0.05, TMM-normalized FPKM...

Additional file 2: Figure S2. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Unigenes identified solely or both for Armillaria mellea and juvenile tuber of Gastrodia elata in th...

Additional file 1: of De novo transcriptome analysis of rose-scented geranium provides insights into the metabolic specificity of terpene and tartaric acid biosynthesis

Lokesh Narnoliya (3638002)
Girija Kaushal (3638005)
Sudhir Singh (619883)
Rajender Sangwan (174658)

January 2017

Figure S1. A phylogenetic tree generated on the basis of a plastid marker trnL-F in 57 Pelargonium s...

Additional file 2: Table S1. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

Yange Xu (4435387)
Yuanqin Zhao (4435384)
Huimin Duan (4435381)
Na Sui (1735756)
Fang Yuan (96264)
Jie Song (60883)

September 2017

Functional classification by KEGG pathways in S. salsa dimorphic seeds. (XLS 20Â kb

Additional file 10: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

Si-Qi Tao (4384186)
Bin Cao (186972)
Cheng-Ming Tian (838397)
Ying-Mei Liang (4384189)

August 2017

GO and KEGG pathway enrichment analysis. This file provides the GO enrichment and KEGG pathway enric...

Additional file 9: Figure S9. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

Zhenhua Li (312199)
Jie Zhang (64655)
Yiling Liu (150663)
Jiehong Zhao (3499199)
Junjie Fu (1947568)
Xueliang Ren (3499202)
Guoying Wang (159551)
Jianhua Wang (159545)

February 2016

Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive ...

Additional file 4: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...

Additional file 1 of Transcriptomic analysis reveals candidate genes regulating development and host interactions of Colletotrichum fructicola

Xiaofei Liang (843086)
Shengping Shang (5568197)
Qiuyue Dong (3751315)
Bo Wang (86769)
Rong Zhang (44942)
Mark Gleason (3751306)
Guangyu Sun (429231)

July 2018

Table S1. Bioinformatic command lines used in this study. Table S2. qRT-PCR primers used in this stu...

Additional file 1: Table S1. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

Anita Dirks-Mulder (3859090)
Roland Butôt (3593165)
Peter van Schaik (3859102)
Jan Wijnands (3859084)
Roel van den Berg (3859087)
Louie Krol (3859096)
Sadhana Doebar (3859105)
Kelly van Kooperen (3859108)
Hugo de Boer (745485)
Elena Kramer (3859099)
Erik Smets (206615)
Rutger Vos (3504797)
Alexander Vrijdaghs (3859093)
Barbara Gravendeel (579289)

March 2017

List of sequences used in the alignments and phylogenetic analyses. Table S2. Transcript primer sequ...

Additional file 11: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

The list of all KEGG pathways of the differentially expressed genes. (XLSX 15Â kb

Additional file 5: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

Sana Khan (3626855)
Swati Upadhyay (3626858)
Feroz Khan (462714)
Sudeep Tandon (653852)
Rakesh Shukla (709813)
Sumit Ghosh (464456)
Vikrant Gupta (398109)
Suchitra Banerjee (3626852)
Laiq ur Rahman (1383300)

January 2017

List of tissue specific unigenes assigned to KEGG pathway with their KEGG IDs and Annotation for PYT...

Additional file 7: of Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng

Le Xue (5058113)
Zilong He (5830418)
Xiaochun Bi (6711887)
Wei Xu (28953)
Ting Wei (113015)
Shuangxiu Wu (644349)
Songnian Hu (6480)

May 2019

Figure S2. Saturation curve of transcriptome sequencing data of each samples of P. ginseng using BWA...

Additional file 1 of Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734

Arburon Sulja (14071920)
Joël F. Pothier (12491626)
Jochen Blom (104512)
Chiaraluce Moretti (9075053)
Roberto Buonaurio (14071923)
Fabio Rezzonico (213623)
Theo H. M. Smits (11233824)

November 2022

Additional file 1: Text S1. Metabolic versatility in Pantoea agglomerans DAPP-PG 734. Table S1. Anti...

Additional file 9: Table S6. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

405 unigenes were significantly down-regulated (log2-FC ≤ -1, q-value < 0.05, TMM-normalized FPKM > ...

Additional file 5: Table S3. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0. 05, TMM-normalized F...

Additional file 3: Table S1. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Sixty-nine unigenes were significantly up-regulated (log2-FC ≥1, q-value < 0.05, TMM-normalized FPKM...

Additional file 2: Figure S2. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Unigenes identified solely or both for Armillaria mellea and juvenile tuber of Gastrodia elata in th...

Additional file 1: of De novo transcriptome analysis of rose-scented geranium provides insights into the metabolic specificity of terpene and tartaric acid biosynthesis

Lokesh Narnoliya (3638002)
Girija Kaushal (3638005)
Sudhir Singh (619883)
Rajender Sangwan (174658)

January 2017

Figure S1. A phylogenetic tree generated on the basis of a plastid marker trnL-F in 57 Pelargonium s...

Additional file 2: Table S1. of Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa

Yange Xu (4435387)
Yuanqin Zhao (4435384)
Huimin Duan (4435381)
Na Sui (1735756)
Fang Yuan (96264)
Jie Song (60883)

September 2017

Functional classification by KEGG pathways in S. salsa dimorphic seeds. (XLS 20Â kb

Additional file 10: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

Si-Qi Tao (4384186)
Bin Cao (186972)
Cheng-Ming Tian (838397)
Ying-Mei Liang (4384189)

August 2017

GO and KEGG pathway enrichment analysis. This file provides the GO enrichment and KEGG pathway enric...

Additional file 9: Figure S9. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

Zhenhua Li (312199)
Jie Zhang (64655)
Yiling Liu (150663)
Jiehong Zhao (3499199)
Junjie Fu (1947568)
Xueliang Ren (3499202)
Guoying Wang (159551)
Jianhua Wang (159545)

February 2016

Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive ...

Additional file 4: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...

Additional file 1 of Transcriptomic analysis reveals candidate genes regulating development and host interactions of Colletotrichum fructicola

Xiaofei Liang (843086)
Shengping Shang (5568197)
Qiuyue Dong (3751315)
Bo Wang (86769)
Rong Zhang (44942)
Mark Gleason (3751306)
Guangyu Sun (429231)

July 2018

Table S1. Bioinformatic command lines used in this study. Table S2. qRT-PCR primers used in this stu...

Additional file 1: Table S1. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

Anita Dirks-Mulder (3859090)
Roland Butôt (3593165)
Peter van Schaik (3859102)
Jan Wijnands (3859084)
Roel van den Berg (3859087)
Louie Krol (3859096)
Sadhana Doebar (3859105)
Kelly van Kooperen (3859108)
Hugo de Boer (745485)
Elena Kramer (3859099)
Erik Smets (206615)
Rutger Vos (3504797)
Alexander Vrijdaghs (3859093)
Barbara Gravendeel (579289)

March 2017

List of sequences used in the alignments and phylogenetic analyses. Table S2. Transcript primer sequ...

Additional file 11: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

The list of all KEGG pathways of the differentially expressed genes. (XLSX 15Â kb

Additional file 5: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

Sana Khan (3626855)
Swati Upadhyay (3626858)
Feroz Khan (462714)
Sudeep Tandon (653852)
Rakesh Shukla (709813)
Sumit Ghosh (464456)
Vikrant Gupta (398109)
Suchitra Banerjee (3626852)
Laiq ur Rahman (1383300)

January 2017

List of tissue specific unigenes assigned to KEGG pathway with their KEGG IDs and Annotation for PYT...

Additional file 7: of Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng

Le Xue (5058113)
Zilong He (5830418)
Xiaochun Bi (6711887)
Wei Xu (28953)
Ting Wei (113015)
Shuangxiu Wu (644349)
Songnian Hu (6480)

May 2019

Figure S2. Saturation curve of transcriptome sequencing data of each samples of P. ginseng using BWA...

Additional file 1 of Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734

Arburon Sulja (14071920)
Joël F. Pothier (12491626)
Jochen Blom (104512)
Chiaraluce Moretti (9075053)
Roberto Buonaurio (14071923)
Fabio Rezzonico (213623)
Theo H. M. Smits (11233824)

November 2022

Additional file 1: Text S1. Metabolic versatility in Pantoea agglomerans DAPP-PG 734. Table S1. Anti...

Additional file 10: Table S7. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Abstract

Extracted data

Additional file 10: Table S7. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Abstract

Extracted data

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