Additional file 9: Table S6. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Additional file 5: Figure S1. of Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)

Jacob Landis (4171024)
Douglas Soltis (117311)
Pamela Soltis (117316)

June 2017

Heatmap showing differential expression of transcripts between half, mid, and mature stages of devel...

Additional file 9: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S8. List of DC-clusters differentially expressed (DE) in galls versus uninfected root at 7 and...

Additional file 9: Figure S9. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

Zhenhua Li (312199)
Jie Zhang (64655)
Yiling Liu (150663)
Jiehong Zhao (3499199)
Junjie Fu (1947568)
Xueliang Ren (3499202)
Guoying Wang (159551)
Jianhua Wang (159545)

February 2016

Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive ...

Additional file 10: Table S7. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0.05, TMM-normalized FP...

Additional file 3: Table S1. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Sixty-nine unigenes were significantly up-regulated (log2-FC ≥1, q-value < 0.05, TMM-normalized FPKM...

Additional file 5: Table S3. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0. 05, TMM-normalized F...

Additional file 2: Figure S2. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Unigenes identified solely or both for Armillaria mellea and juvenile tuber of Gastrodia elata in th...

Additional file 9: Table S8. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

List of genes associated with biosynthesis of the two major hormone classes sesquiterpenoid juvenile...

Additional file 1 of Transcriptomic analysis reveals candidate genes regulating development and host interactions of Colletotrichum fructicola

Xiaofei Liang (843086)
Shengping Shang (5568197)
Qiuyue Dong (3751315)
Bo Wang (86769)
Rong Zhang (44942)
Mark Gleason (3751306)
Guangyu Sun (429231)

July 2018

Table S1. Bioinformatic command lines used in this study. Table S2. qRT-PCR primers used in this stu...

Additional file 1: Table S1. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

Anita Dirks-Mulder (3859090)
Roland Butôt (3593165)
Peter van Schaik (3859102)
Jan Wijnands (3859084)
Roel van den Berg (3859087)
Louie Krol (3859096)
Sadhana Doebar (3859105)
Kelly van Kooperen (3859108)
Hugo de Boer (745485)
Elena Kramer (3859099)
Erik Smets (206615)
Rutger Vos (3504797)
Alexander Vrijdaghs (3859093)
Barbara Gravendeel (579289)

March 2017

List of sequences used in the alignments and phylogenetic analyses. Table S2. Transcript primer sequ...

Additional file 1: of De novo transcriptome analysis of rose-scented geranium provides insights into the metabolic specificity of terpene and tartaric acid biosynthesis

Lokesh Narnoliya (3638002)
Girija Kaushal (3638005)
Sudhir Singh (619883)
Rajender Sangwan (174658)

January 2017

Figure S1. A phylogenetic tree generated on the basis of a plastid marker trnL-F in 57 Pelargonium s...

Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be different...

Additional file 9: of Transcriptome profiling of genes related to light-induced anthocyanin biosynthesis in eggplant (Solanum melongena L.) before purple color becomes evident

Jing Li (10611)
Yong-Jun He (4977974)
Lu Zhou (230418)
Yang Liu (4212112)
Mingmin Jiang (4977977)
Li Ren (417022)
Huoying Chen (456619)

March 2018

Figure S3. GO categories assigned to the 869 DEGs. The left y-axis shows the percentages of proteins...

Additional file 2: Table S2. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

Wade Roberts (3291660)
Eric Roalson (3291663)

March 2017

Number of contigs detected as rRNAs and tRNAs in each transcriptome. (XLSX 33 kb

Additional file 8: of De novo transcriptome assembly of the eight major organs of Sacha Inchi (Plukenetia volubilis) and the identification of genes involved in Îą-linolenic acid metabolism

Xiao-Di Hu (5258429)
Bang-Zhen Pan (5258435)
Qiantang Fu (5258423)
Longjian Niu (5258426)
Mao-Sheng Chen (5258438)
Zeng-Fu Xu (5258432)

May 2018

Figure S6. The statistics of unigenes in eight organs. a) The percentage of unigenes expressed in ea...

Additional file 5: Figure S1. of Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)

Jacob Landis (4171024)
Douglas Soltis (117311)
Pamela Soltis (117316)

June 2017

Heatmap showing differential expression of transcripts between half, mid, and mature stages of devel...

Additional file 9: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S8. List of DC-clusters differentially expressed (DE) in galls versus uninfected root at 7 and...

Additional file 9: Figure S9. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

Zhenhua Li (312199)
Jie Zhang (64655)
Yiling Liu (150663)
Jiehong Zhao (3499199)
Junjie Fu (1947568)
Xueliang Ren (3499202)
Guoying Wang (159551)
Jianhua Wang (159545)

February 2016

Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive ...

Additional file 10: Table S7. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0.05, TMM-normalized FP...

Additional file 3: Table S1. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Sixty-nine unigenes were significantly up-regulated (log2-FC ≥1, q-value < 0.05, TMM-normalized FPKM...

Additional file 5: Table S3. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0. 05, TMM-normalized F...

Additional file 2: Figure S2. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Unigenes identified solely or both for Armillaria mellea and juvenile tuber of Gastrodia elata in th...

Additional file 9: Table S8. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

List of genes associated with biosynthesis of the two major hormone classes sesquiterpenoid juvenile...

Additional file 1 of Transcriptomic analysis reveals candidate genes regulating development and host interactions of Colletotrichum fructicola

Xiaofei Liang (843086)
Shengping Shang (5568197)
Qiuyue Dong (3751315)
Bo Wang (86769)
Rong Zhang (44942)
Mark Gleason (3751306)
Guangyu Sun (429231)

July 2018

Table S1. Bioinformatic command lines used in this study. Table S2. qRT-PCR primers used in this stu...

Additional file 1: Table S1. of Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system

Anita Dirks-Mulder (3859090)
Roland Butôt (3593165)
Peter van Schaik (3859102)
Jan Wijnands (3859084)
Roel van den Berg (3859087)
Louie Krol (3859096)
Sadhana Doebar (3859105)
Kelly van Kooperen (3859108)
Hugo de Boer (745485)
Elena Kramer (3859099)
Erik Smets (206615)
Rutger Vos (3504797)
Alexander Vrijdaghs (3859093)
Barbara Gravendeel (579289)

March 2017

List of sequences used in the alignments and phylogenetic analyses. Table S2. Transcript primer sequ...

Additional file 1: of De novo transcriptome analysis of rose-scented geranium provides insights into the metabolic specificity of terpene and tartaric acid biosynthesis

Lokesh Narnoliya (3638002)
Girija Kaushal (3638005)
Sudhir Singh (619883)
Rajender Sangwan (174658)

January 2017

Figure S1. A phylogenetic tree generated on the basis of a plastid marker trnL-F in 57 Pelargonium s...

Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be different...

Additional file 9: of Transcriptome profiling of genes related to light-induced anthocyanin biosynthesis in eggplant (Solanum melongena L.) before purple color becomes evident

Jing Li (10611)
Yong-Jun He (4977974)
Lu Zhou (230418)
Yang Liu (4212112)
Mingmin Jiang (4977977)
Li Ren (417022)
Huoying Chen (456619)

March 2018

Figure S3. GO categories assigned to the 869 DEGs. The left y-axis shows the percentages of proteins...

Additional file 2: Table S2. of Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae)

Wade Roberts (3291660)
Eric Roalson (3291663)

March 2017

Number of contigs detected as rRNAs and tRNAs in each transcriptome. (XLSX 33 kb

Additional file 8: of De novo transcriptome assembly of the eight major organs of Sacha Inchi (Plukenetia volubilis) and the identification of genes involved in Îą-linolenic acid metabolism

Xiao-Di Hu (5258429)
Bang-Zhen Pan (5258435)
Qiantang Fu (5258423)
Longjian Niu (5258426)
Mao-Sheng Chen (5258438)
Zeng-Fu Xu (5258432)

May 2018

Figure S6. The statistics of unigenes in eight organs. a) The percentage of unigenes expressed in ea...

Additional file 5: Figure S1. of Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)

Jacob Landis (4171024)
Douglas Soltis (117311)
Pamela Soltis (117316)

June 2017

Heatmap showing differential expression of transcripts between half, mid, and mature stages of devel...

Additional file 9: of Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita

ClĂŠmence Medina (6100826)
Martine da Rocha (6100817)
Marc Magliano (223262)
AlizĂŠe Raptopoulo (6100829)
Nathalie Marteu (6100823)
Kevin Lebrigand (138002)
Pierre Abad (115959)
Bruno Favery (190085)
StĂŠphanie Jaubert-Possamai (6100832)

December 2018

Table S8. List of DC-clusters differentially expressed (DE) in galls versus uninfected root at 7 and...

Additional file 9: Figure S9. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

Zhenhua Li (312199)
Jie Zhang (64655)
Yiling Liu (150663)
Jiehong Zhao (3499199)
Junjie Fu (1947568)
Xueliang Ren (3499202)
Guoying Wang (159551)
Jianhua Wang (159545)

February 2016

Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive ...

Additional file 9: Table S6. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Abstract

Extracted data

Additional file 9: Table S6. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Abstract

Extracted data

Related items

Related items