Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive germination seed (FDR adjusted p-value = 8.04E-04). Enriched KEGG pathway was identified by hypergeometric test with a significance level of FDR corrected p-value < 0.05. Colors of the gene rectangles indicate the gene express patterns which were shown as the legend. The complete KEGG pathway enrichment list were shown in Table 3. (TIF 600 kb
Table S4. Differentially expressed TFs related to F. hupehensis seed germination. (XLSX 11 kb
Table S6. List of the 12 genes in the plant hormone transduction pathway (ko04075) identified in ‘Re...
Table S6. KEGG pathways represented with DEGs between developmental phases of Pongamia seeds. (XLS 5...
The distribution of best hits species was shown in dormancy and germination of Nicotiana tabacum L. ...
Example of GO term enriched in the gene differential expression analyses of auxin-responsive germina...
Figure S3. Hierarchical clustering of DEGs between the W and CK groups, the G and CK groups, and the...
Figure S2. Clusters of DEGs obtained by K-means. DEGs were divided into eight subclasses. All data s...
Figure S2. KEGG enrichment of DEGs (Y3 vs. B3) in flavonoid and phenylpropanoid biosynthesis. (XLSX ...
Figure S1. Correlation coefficients among the RPKM of unigenes of the samples. All data shown indica...
Figure S7. Relative expression of genes encoding enzymes involved in flavone or flavonoid metabolism...
Table S9. Selected DEGs in auxin biosynthesis, transport, and signal transduction pathway. (XLSX 12 ...
Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...
Figure S10. KEGG Pathway Map of Plant Hormone Signal Transduction for the specific common DEGs of ZY...
Additional file 2: Fig. S1. Identification of the DEGs in five development stages: S2 vs. S1 (A); S3...
Figure S1. Impact of PP intermediates on growth. Figure S2. Sensitivity of ref3 alleles in the cytok...
Table S4. Differentially expressed TFs related to F. hupehensis seed germination. (XLSX 11 kb
Table S6. List of the 12 genes in the plant hormone transduction pathway (ko04075) identified in ‘Re...
Table S6. KEGG pathways represented with DEGs between developmental phases of Pongamia seeds. (XLS 5...
The distribution of best hits species was shown in dormancy and germination of Nicotiana tabacum L. ...
Example of GO term enriched in the gene differential expression analyses of auxin-responsive germina...
Figure S3. Hierarchical clustering of DEGs between the W and CK groups, the G and CK groups, and the...
Figure S2. Clusters of DEGs obtained by K-means. DEGs were divided into eight subclasses. All data s...
Figure S2. KEGG enrichment of DEGs (Y3 vs. B3) in flavonoid and phenylpropanoid biosynthesis. (XLSX ...
Figure S1. Correlation coefficients among the RPKM of unigenes of the samples. All data shown indica...
Figure S7. Relative expression of genes encoding enzymes involved in flavone or flavonoid metabolism...
Table S9. Selected DEGs in auxin biosynthesis, transport, and signal transduction pathway. (XLSX 12 ...
Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...
Figure S10. KEGG Pathway Map of Plant Hormone Signal Transduction for the specific common DEGs of ZY...
Additional file 2: Fig. S1. Identification of the DEGs in five development stages: S2 vs. S1 (A); S3...
Figure S1. Impact of PP intermediates on growth. Figure S2. Sensitivity of ref3 alleles in the cytok...
Table S4. Differentially expressed TFs related to F. hupehensis seed germination. (XLSX 11 kb
Table S6. List of the 12 genes in the plant hormone transduction pathway (ko04075) identified in ‘Re...
Table S6. KEGG pathways represented with DEGs between developmental phases of Pongamia seeds. (XLS 5...