<p>(A) Changes of predicted mutability of the VRC26 heavy (left) and light (right) chains. (B) Changes of predicted mutability of the CH103 heavy (left) and light (right) chains. (C) Changes of predicted mutability of the VRC01 clade 03+06 heavy (left) and light (right) chains. (D) Changes of predicted mutability of the VRC01 clade 08 heavy (left) and light (right) chains. (E) Changes of predicted mutability of the VRC01 clade H3. (F) Changes of predicted mutability of the VRC01 clade L3. Dashed line represents the mutability of UCA (VRC26 and CH103) or MRCA (VRC01 clades) of the lineages.</p
<p>The red vertical line (left) indicates the single threshold time between inter-intraspecific bran...
<p>Bar diagrams A-G present results from populations HSG, LCH, MPG, BPC, GX, LD, and ZHG, respective...
<p>Each subplot contains traces (including burn-in period) from 12 chains, where each trace is compo...
<p>The mean and 95% highest probability density interval (HPD) are shown for each stage. Stages from...
<p>The evolutionary rates for the stages of the three lineages were calculated using BEAST2. The mea...
<p>To study the dynamics of evolutionary rate, selection pressure and mutability over time, we separ...
<p>On the left is the MCC (Maximum Clade Credibility) tree based on the complete ORF sequences, with...
These data represent the distribution of genotypes at the outcrossing modifier locus over time. The ...
<p>The upper panels depict mutability (changes per nucleotide at risk) as a function of NAP occupanc...
<p>(A) Mutation prevalences across time series. (B) One of 51 recombination networks that fit the da...
<div><p><b>A</b>: Overall topology of MCC tree of the Chinese CRF01_AE lineages and the most closely...
The number of polymorphisms introduced via recombination to mutation (r/m) and the number of recombi...
<p>First row: short pre-adaption (30 generations), but no per-deme extinctions. Second row: long pre...
<p>T, threshold genetic distance from the branch tips where transition occurred (presented for singl...
<p>Posterior probability of each node is shown. The horizontal bar at each node is the 95% HPD inter...
<p>The red vertical line (left) indicates the single threshold time between inter-intraspecific bran...
<p>Bar diagrams A-G present results from populations HSG, LCH, MPG, BPC, GX, LD, and ZHG, respective...
<p>Each subplot contains traces (including burn-in period) from 12 chains, where each trace is compo...
<p>The mean and 95% highest probability density interval (HPD) are shown for each stage. Stages from...
<p>The evolutionary rates for the stages of the three lineages were calculated using BEAST2. The mea...
<p>To study the dynamics of evolutionary rate, selection pressure and mutability over time, we separ...
<p>On the left is the MCC (Maximum Clade Credibility) tree based on the complete ORF sequences, with...
These data represent the distribution of genotypes at the outcrossing modifier locus over time. The ...
<p>The upper panels depict mutability (changes per nucleotide at risk) as a function of NAP occupanc...
<p>(A) Mutation prevalences across time series. (B) One of 51 recombination networks that fit the da...
<div><p><b>A</b>: Overall topology of MCC tree of the Chinese CRF01_AE lineages and the most closely...
The number of polymorphisms introduced via recombination to mutation (r/m) and the number of recombi...
<p>First row: short pre-adaption (30 generations), but no per-deme extinctions. Second row: long pre...
<p>T, threshold genetic distance from the branch tips where transition occurred (presented for singl...
<p>Posterior probability of each node is shown. The horizontal bar at each node is the 95% HPD inter...
<p>The red vertical line (left) indicates the single threshold time between inter-intraspecific bran...
<p>Bar diagrams A-G present results from populations HSG, LCH, MPG, BPC, GX, LD, and ZHG, respective...
<p>Each subplot contains traces (including burn-in period) from 12 chains, where each trace is compo...