Additional file 12: Table S9. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Additional file 4: Figure S2. of Construction of relatedness matrices using genotyping-by-sequencing data

Ken Dodds (3501542)
John McEwan (45371)
Rudiger Brauning (47247)
Rayna Anderson (3504983)
Tracey Stijn (3504986)
Theodor KristjĂĄnsson (3504992)
Shannon Clarke (3504989)

December 2015

Comparison of estimated relationship estimation bias at low depth when using estimated or true allel...

Additional file 1: Table S1. of Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

Jennifer Pavlides (3449879)
Zhihong Zhu (227325)
Jacob Gratten (3300798)
Allan McRae (3400103)
Naomi Wray (3449882)
Jian Yang (12136)

August 2016

GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...

Additional file 1: of Adjusting heterogeneous ascertainment bias for genetic association analysis with extended families

Suyeon Park (2818120)
Sungyoung Lee (786984)
Young Lee (101856)
Christine Herold (160895)
Basavaraj Hooli (3409457)
Kristina Mullin (3409448)
Taesung Park (4438)
Changsoon Park (3409451)
Lars Bertram (28887)
Christoph Lange (213285)
Rudolph Tanzi (3409454)
Sungho Won (91486)

August 2015

Web-based Supporting Materials for âAdjusting heterogeneous ascertainment bias for genetic associa...

Additional file 14: Table S11. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Kinship estimation using SNPs with MAF >0.4. Data are from the CEU population of 1000 genomes data. ...

Additional file 7: Table S4. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Average (standard deviation) of kinship coefficient estimates of the three methods for common valid ...

Additional file 3: Figure S2. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

The distribution of minor allele frequencies of SNPs on chr 19 of the HapMap CEU individuals. (DOC 2...

Additional file 8: Table S5. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Number of all valid pairs per population and method, and common valid pairs for KIND and KING. Data:...

Additional file 10: Table S7. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Average (standard deviation) of kinship coefficient estimates of KIND and KING for common pairs and ...

Additional file 1: of Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies

Roby Joehanes (560601)
Xiaoling Zhang (420384)
Tianxiao Huan (599733)
Chen Yao (137375)
Sai-xia Ying (705056)
Quang Nguyen (565637)
Cumhur Demirkale (3695884)
Michael Feolo (264871)
Nataliya Sharopova (3695872)
Anne Sturcke (3695869)
Alejandro SchĂ¤ffer (3412292)
Nancy Heard-Costa (165368)
Han Chen (228557)
Po-ching Liu (3695875)
Richard Wang (84158)
Kimberly Woodhouse (402116)
Kahraman Tanriverdi (100180)
Jane Freedman (3695881)
Nalini Raghavachari (41488)
JosĂŠe Dupuis (3503084)
Andrew Johnson (29446)
Christopher OâDonnell (3695890)
Daniel Levy (51573)
Peter Munson (3695878)

January 2017

Supplementary Materials, including nine figures, Supplementary Methods, and 12 tables. (PDF 1844 kb

Additional file 1: Table S1. of Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

Reka Nagy (3819652)
Thibaud Boutin (3819655)
Jonathan Marten (3819643)
Jennifer Huffman (174626)
Shona Kerr (350240)
Archie Campbell (669891)
Louise Evenden (3819649)
Jude Gibson (2954124)
Carmen Amador (122097)
David Howard (66812)
Pau Navarro (160568)
Andrew Morris (238622)
Ian Deary (489588)
Lynne Hocking (3819640)
Sandosh Padmanabhan (238533)
Blair Smith (3108897)
Peter Joshi (3819646)
James Wilson (302768)
Nicholas Hastie (190796)
Alan Wright (255176)
Andrew McIntosh (83234)
David Porteous (150029)
Chris Haley (384245)
Veronique Vitart (149854)
Caroline Hayward (149856)

March 2017

Phenotypes and covariates. Table S2. Phenotype heritability. Table S3. Lambdas for all traits, calcu...

Additional file 10: Table S3. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Shuji Sato (275645)
Yoshinobu Uemoto (3421973)
Takashi Kikuchi (1510180)
Sachiko Egawa (3485546)
Kimiko Kohira (3485555)
Tomomi Saito (768044)
Hironori Sakuma (3485552)
Satoshi Miyashita (3485558)
Shinji Arata (3485549)
Takatoshi Kojima (787343)
Keiichi Suzuki (3485561)

April 2016

Number of replicates for detection of significant SNPs in simulation study. (XLSX 10 kb

Additional file 11: Table S7. of Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration

Oleg Balanovsky (31853)
Vladimir Gurianov (3729193)
Valery Zaporozhchenko (237989)
Olga Balaganskaya (3729181)
Vadim Urasin (3729196)
Maxat Zhabagin (717995)
Viola Grugni (150495)
Rebekah Canada (3729190)
Nadia Al-Zahery (150508)
Alessandro Raveane (833880)
Shao-Qing Wen (3729199)
Shi Yan (164233)
Xianpin Wang (3729187)
Pierre Zalloua (490360)
Abdullah Marafi (3729184)
Sergey Koshel (237988)
Ornella Semino (150533)
Chris Tyler-Smith (31857)
Elena Balanovska (237996)

February 2017

Phylogenetic tree of the haplogroup Q3-L275 based on samples sequenced by one particular technology ...

Additional file 10: of Identification of five novel genetic loci related to facial morphology by genome-wide association studies

Seongwon Cha (107939)
Ji Lim (3437312)
Ah Park (5424596)
Jun-Hyeong Do (5424599)
Si Lee (3777076)
Chol Shin (468586)
Nam Cho (3440081)
Ji-One Kang (844616)
Jeong Nam (5424605)
Jong-Sik Kim (5424602)
Kwang-Man Woo (5424608)
Seung-Hwan Lee (231008)
Jong Kim (234077)
Bermseok Oh (39719)

June 2018

Table S7. Additional associated facial traits of five novel SNPs in the discovery GWAS (Pâ<â0.00...

Additional file 13: of Analysis of the human Y-chromosome haplogroup Q characterizes ancient population movements in Eurasia and the Americas

Viola Grugni (150495)
Alessandro Raveane (833880)
Linda Ongaro (6258263)
Vincenza Battaglia (150500)
Beniamino Trombetta (121588)
Giulia Colombo (6258266)
Marco Capodiferro (3399029)
Anna Olivieri (144908)
Alessandro Achilli (42157)
Ugo Perego (6258269)
Jorge Motta (160254)
Maribel Tribaldos (160235)
Scott Woodward (231416)
Luca Ferretti (159441)
Fulvio Cruciani (121590)
Antonio Torroni (42164)
Ornella Semino (150533)

January 2019

Figure S7. Phylogeography of the Native American Hgs Q-Z5906 and Q-Z5908 (panels a and b, respective...

Additional file 1: Figures S1 and S2. of Leveraging local ancestry to detect gene-gene interactions in genome-wide data

Hugues Aschard (110171)
Alexander Gusev (303262)
Robert Brown (37283)
Bogdan Pasaniuc (120790)

October 2015

Power comparison between SNP-based and local ancestry-based interaction tests when using inferred an...

Additional file 4: Figure S2. of Construction of relatedness matrices using genotyping-by-sequencing data

Ken Dodds (3501542)
John McEwan (45371)
Rudiger Brauning (47247)
Rayna Anderson (3504983)
Tracey Stijn (3504986)
Theodor KristjĂĄnsson (3504992)
Shannon Clarke (3504989)

December 2015

Comparison of estimated relationship estimation bias at low depth when using estimated or true allel...

Additional file 1: Table S1. of Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

Jennifer Pavlides (3449879)
Zhihong Zhu (227325)
Jacob Gratten (3300798)
Allan McRae (3400103)
Naomi Wray (3449882)
Jian Yang (12136)

August 2016

GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...

Additional file 1: of Adjusting heterogeneous ascertainment bias for genetic association analysis with extended families

Suyeon Park (2818120)
Sungyoung Lee (786984)
Young Lee (101856)
Christine Herold (160895)
Basavaraj Hooli (3409457)
Kristina Mullin (3409448)
Taesung Park (4438)
Changsoon Park (3409451)
Lars Bertram (28887)
Christoph Lange (213285)
Rudolph Tanzi (3409454)
Sungho Won (91486)

August 2015

Web-based Supporting Materials for âAdjusting heterogeneous ascertainment bias for genetic associa...

Additional file 14: Table S11. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Kinship estimation using SNPs with MAF >0.4. Data are from the CEU population of 1000 genomes data. ...

Additional file 7: Table S4. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Average (standard deviation) of kinship coefficient estimates of the three methods for common valid ...

Additional file 3: Figure S2. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

The distribution of minor allele frequencies of SNPs on chr 19 of the HapMap CEU individuals. (DOC 2...

Additional file 8: Table S5. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Number of all valid pairs per population and method, and common valid pairs for KIND and KING. Data:...

Additional file 10: Table S7. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Hyokyeong Lee (3459011)
Liang Chen (73736)

May 2016

Average (standard deviation) of kinship coefficient estimates of KIND and KING for common pairs and ...

Additional file 1: of Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies

Roby Joehanes (560601)
Xiaoling Zhang (420384)
Tianxiao Huan (599733)
Chen Yao (137375)
Sai-xia Ying (705056)
Quang Nguyen (565637)
Cumhur Demirkale (3695884)
Michael Feolo (264871)
Nataliya Sharopova (3695872)
Anne Sturcke (3695869)
Alejandro SchĂ¤ffer (3412292)
Nancy Heard-Costa (165368)
Han Chen (228557)
Po-ching Liu (3695875)
Richard Wang (84158)
Kimberly Woodhouse (402116)
Kahraman Tanriverdi (100180)
Jane Freedman (3695881)
Nalini Raghavachari (41488)
JosĂŠe Dupuis (3503084)
Andrew Johnson (29446)
Christopher OâDonnell (3695890)
Daniel Levy (51573)
Peter Munson (3695878)

January 2017

Supplementary Materials, including nine figures, Supplementary Methods, and 12 tables. (PDF 1844 kb

Additional file 1: Table S1. of Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

Reka Nagy (3819652)
Thibaud Boutin (3819655)
Jonathan Marten (3819643)
Jennifer Huffman (174626)
Shona Kerr (350240)
Archie Campbell (669891)
Louise Evenden (3819649)
Jude Gibson (2954124)
Carmen Amador (122097)
David Howard (66812)
Pau Navarro (160568)
Andrew Morris (238622)
Ian Deary (489588)
Lynne Hocking (3819640)
Sandosh Padmanabhan (238533)
Blair Smith (3108897)
Peter Joshi (3819646)
James Wilson (302768)
Nicholas Hastie (190796)
Alan Wright (255176)
Andrew McIntosh (83234)
David Porteous (150029)
Chris Haley (384245)
Veronique Vitart (149854)
Caroline Hayward (149856)

March 2017

Phenotypes and covariates. Table S2. Phenotype heritability. Table S3. Lambdas for all traits, calcu...

Additional file 10: Table S3. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

Shuji Sato (275645)
Yoshinobu Uemoto (3421973)
Takashi Kikuchi (1510180)
Sachiko Egawa (3485546)
Kimiko Kohira (3485555)
Tomomi Saito (768044)
Hironori Sakuma (3485552)
Satoshi Miyashita (3485558)
Shinji Arata (3485549)
Takatoshi Kojima (787343)
Keiichi Suzuki (3485561)

April 2016

Number of replicates for detection of significant SNPs in simulation study. (XLSX 10 kb

Additional file 11: Table S7. of Phylogeography of human Y-chromosome haplogroup Q3-L275 from an academic/citizen science collaboration

Oleg Balanovsky (31853)
Vladimir Gurianov (3729193)
Valery Zaporozhchenko (237989)
Olga Balaganskaya (3729181)
Vadim Urasin (3729196)
Maxat Zhabagin (717995)
Viola Grugni (150495)
Rebekah Canada (3729190)
Nadia Al-Zahery (150508)
Alessandro Raveane (833880)
Shao-Qing Wen (3729199)
Shi Yan (164233)
Xianpin Wang (3729187)
Pierre Zalloua (490360)
Abdullah Marafi (3729184)
Sergey Koshel (237988)
Ornella Semino (150533)
Chris Tyler-Smith (31857)
Elena Balanovska (237996)

February 2017

Phylogenetic tree of the haplogroup Q3-L275 based on samples sequenced by one particular technology ...

Additional file 10: of Identification of five novel genetic loci related to facial morphology by genome-wide association studies

Seongwon Cha (107939)
Ji Lim (3437312)
Ah Park (5424596)
Jun-Hyeong Do (5424599)
Si Lee (3777076)
Chol Shin (468586)
Nam Cho (3440081)
Ji-One Kang (844616)
Jeong Nam (5424605)
Jong-Sik Kim (5424602)
Kwang-Man Woo (5424608)
Seung-Hwan Lee (231008)
Jong Kim (234077)
Bermseok Oh (39719)

June 2018

Table S7. Additional associated facial traits of five novel SNPs in the discovery GWAS (Pâ<â0.00...

Additional file 13: of Analysis of the human Y-chromosome haplogroup Q characterizes ancient population movements in Eurasia and the Americas

Viola Grugni (150495)
Alessandro Raveane (833880)
Linda Ongaro (6258263)
Vincenza Battaglia (150500)
Beniamino Trombetta (121588)
Giulia Colombo (6258266)
Marco Capodiferro (3399029)
Anna Olivieri (144908)
Alessandro Achilli (42157)
Ugo Perego (6258269)
Jorge Motta (160254)
Maribel Tribaldos (160235)
Scott Woodward (231416)
Luca Ferretti (159441)
Fulvio Cruciani (121590)
Antonio Torroni (42164)
Ornella Semino (150533)

January 2019

Figure S7. Phylogeography of the Native American Hgs Q-Z5906 and Q-Z5908 (panels a and b, respective...

Additional file 1: Figures S1 and S2. of Leveraging local ancestry to detect gene-gene interactions in genome-wide data

Hugues Aschard (110171)
Alexander Gusev (303262)
Robert Brown (37283)
Bogdan Pasaniuc (120790)

October 2015

Power comparison between SNP-based and local ancestry-based interaction tests when using inferred an...

Additional file 4: Figure S2. of Construction of relatedness matrices using genotyping-by-sequencing data

Ken Dodds (3501542)
John McEwan (45371)
Rudiger Brauning (47247)
Rayna Anderson (3504983)
Tracey Stijn (3504986)
Theodor KristjĂĄnsson (3504992)
Shannon Clarke (3504989)

December 2015

Comparison of estimated relationship estimation bias at low depth when using estimated or true allel...

Additional file 1: Table S1. of Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits

Jennifer Pavlides (3449879)
Zhihong Zhu (227325)
Jacob Gratten (3300798)
Allan McRae (3400103)
Naomi Wray (3449882)
Jian Yang (12136)

August 2016

GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...

Additional file 1: of Adjusting heterogeneous ascertainment bias for genetic association analysis with extended families

Suyeon Park (2818120)
Sungyoung Lee (786984)
Young Lee (101856)
Christine Herold (160895)
Basavaraj Hooli (3409457)
Kristina Mullin (3409448)
Taesung Park (4438)
Changsoon Park (3409451)
Lars Bertram (28887)
Christoph Lange (213285)
Rudolph Tanzi (3409454)
Sungho Won (91486)

August 2015

Web-based Supporting Materials for âAdjusting heterogeneous ascertainment bias for genetic associa...

Additional file 12: Table S9. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Abstract

Extracted data

Additional file 12: Table S9. of Inference of kinship using spatial distributions of SNPs for genome-wide association studies

Abstract

Extracted data

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