Additional file 9: Table S4. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Additional file 1: of Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle

I. Berg (6590870)
B. Hayes (3511316)
A. Chamberlain (3552431)
M. Goddard (3486104)

April 2019

Correlations between local GEBV and gene expression. Manhattan plots showing the correlation between...

Genome-wide association studies of female reproduction in tropically adapted beef cattle

Hawken, R. J.
Zhang, Y. D.
Fortes, M. R. S.
Collis, E.
Barris, W. C.
Corbet, N. J.
Williams, P. J.
Fordyce, G.
Holroyd, R. G.
Walkley, J. R. W
Barendse, W.
Johnston, D. J.
Prayaga, K. C.
Tier, B.
Reverter, A.
Lehnert S. A.

May 2012

Genome-wide association studies (GWAS) are a powerful tool for detecting genomic regions explaining ...

Additional file 6: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA5, −log10(p) values plotted against the genomic positions for each trait. (PNG 306 kb

Additional file 4: Table S3. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing previously identified production or fertility trait QTL that overlap with the ...

Additional file 8: Table S2. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS a...

Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 2: Figure S2. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Genome-wide association analysis and quantile-quantile (Q-Q) of P-values of SNPs from single SNP reg...

Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Nayeri, Shadi
Sargolzaei, Mehdi
Abo-Ismail, Mohammed K.
May, Natalie
Miller, Stephen P.
Schenkel, Flavio
Moore, Stephen S.
Stothard, Paul

June 2016

Background: Genome-wide association studies (GWAS) are a powerful tool for detecting genomic regions...

Additional file 16: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

Gene networks generated by the IPA® platform for fat yield (a) and fertility index (b). Genes marked...

Additional file 4: Figure S4. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 9 of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA19, −log10(p) values plotted against the genomic positions for each trait. (PNG 456 kb

Additional file 4: Figure S4. of The patterns of genomic variances and covariances across genome for milk production traits between Chinese and Nordic Holstein populations

Xiujin Li (2160691)
Mogens Lund (3512933)
Luc Janss (184049)
Chonglong Wang (3584984)
Xiangdong Ding (122577)
Qin Zhang (58638)
Guosheng Su (307770)

March 2017

Distribution of proportions of genomic covariances and genomic correlations explained by chromosome ...

Additional file 3: Figure S3. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 1: of Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle

I. Berg (6590870)
B. Hayes (3511316)
A. Chamberlain (3552431)
M. Goddard (3486104)

April 2019

Correlations between local GEBV and gene expression. Manhattan plots showing the correlation between...

Genome-wide association studies of female reproduction in tropically adapted beef cattle

Hawken, R. J.
Zhang, Y. D.
Fortes, M. R. S.
Collis, E.
Barris, W. C.
Corbet, N. J.
Williams, P. J.
Fordyce, G.
Holroyd, R. G.
Walkley, J. R. W
Barendse, W.
Johnston, D. J.
Prayaga, K. C.
Tier, B.
Reverter, A.
Lehnert S. A.

May 2012

Genome-wide association studies (GWAS) are a powerful tool for detecting genomic regions explaining ...

Additional file 6: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA5, −log10(p) values plotted against the genomic positions for each trait. (PNG 306 kb

Additional file 4: Table S3. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing previously identified production or fertility trait QTL that overlap with the ...

Additional file 8: Table S2. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS a...

Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonfe...

Additional file 2: Figure S2. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Genome-wide association analysis and quantile-quantile (Q-Q) of P-values of SNPs from single SNP reg...

Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Nayeri, Shadi
Sargolzaei, Mehdi
Abo-Ismail, Mohammed K.
May, Natalie
Miller, Stephen P.
Schenkel, Flavio
Moore, Stephen S.
Stothard, Paul

June 2016

Background: Genome-wide association studies (GWAS) are a powerful tool for detecting genomic regions...

Additional file 16: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

Gene networks generated by the IPA® platform for fat yield (a) and fertility index (b). Genes marked...

Additional file 4: Figure S4. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Additional file 9 of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA19, −log10(p) values plotted against the genomic positions for each trait. (PNG 456 kb

Additional file 4: Figure S4. of The patterns of genomic variances and covariances across genome for milk production traits between Chinese and Nordic Holstein populations

Xiujin Li (2160691)
Mogens Lund (3512933)
Luc Janss (184049)
Chonglong Wang (3584984)
Xiangdong Ding (122577)
Qin Zhang (58638)
Guosheng Su (307770)

March 2017

Distribution of proportions of genomic covariances and genomic correlations explained by chromosome ...

Additional file 3: Figure S3. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 1: of Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle

I. Berg (6590870)
B. Hayes (3511316)
A. Chamberlain (3552431)
M. Goddard (3486104)

April 2019

Correlations between local GEBV and gene expression. Manhattan plots showing the correlation between...

Genome-wide association studies of female reproduction in tropically adapted beef cattle

Hawken, R. J.
Zhang, Y. D.
Fortes, M. R. S.
Collis, E.
Barris, W. C.
Corbet, N. J.
Williams, P. J.
Fordyce, G.
Holroyd, R. G.
Walkley, J. R. W
Barendse, W.
Johnston, D. J.
Prayaga, K. C.
Tier, B.
Reverter, A.
Lehnert S. A.

May 2012

Genome-wide association studies (GWAS) are a powerful tool for detecting genomic regions explaining ...

Additional file 6: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA5, −log10(p) values plotted against the genomic positions for each trait. (PNG 306 kb

Additional file 9: Table S4. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Abstract

Extracted data

Additional file 9: Table S4. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Abstract

Extracted data

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