Additional file 2: Table S1. of Recombination-driven generation of the largest pathogen repository of antigen variants in the protozoan Trypanosoma cruzi

Newly Annotated and Modified TcTS. (a) 735 TcTS genes annotated as “real”; full-length containing both signal peptide and GPI anchor motifs and whose amino acid translations resulted in no in-frame stop codons; (b) List of all TcTS genes; (c) List of newly annotated TcTS and those whose bounds were modified in this study. Temporary IDs were assigned to each sequence by adding “2000” followed by a unique identifier for each newly discovered sequence on a particular contig and by pre-pending “1000” to the unique identifier for each modified sequence. (d) Locations of all TcTS genes and (e) newly identified, and modified TcTS on the T. cruzi chromosomes. Nucleotide sequences are indicated as “full-length” if they encoded both a signal sequence and GPI-anchor addition site, “partial” if encoding a signal sequence but not a GPI anchor addition site, and “pseudogene” if lacking a signal sequence. Sequences whose translations contain in-frame stop codon(s) are annotated with “in-frame stop” (f) List of 40 “model” full-length TcTS genes of at least 2Kb in length and containing both a signal peptide and GPI anchor motif. (XLSX 572 kb