Table S8. List of genes used to estimate the chromosomal ploidy of the seven TcII field isolates, after the exclusion of genes with outlier coverages based on iterative Grubbs’ tests. Each isolate, S11, S154a, S162a, S15, S92a, S23b and S44a is represented in a different sheet. (XLSX 1150 kb
Figure S2 Phylogenetic incongruence between individual nuclear markers applied to 35 TcI Brazilian i...
Newly Annotated and Modified TcTS. (a) 735 TcTS genes annotated as “real”; full-length containing bo...
Table S1. Strain information. Table S2. Densitometry of PFGE. Table S3. Sequencing and genome statis...
Table S4. Ploidy estimations and statistic validation of all 41 chromosomes of the seven TcII field ...
Figure S2. Boxplot of the predicted ploidy of T. cruzi TcII field isolates. The predicted ploidy of ...
Table S3. T. cruzi CL Brener single-copy gene IDs from the 701 genes used to estimate nuclear genomi...
Table S2. T. cruzi CL Brener single-copy gene IDs from the 794 genes recovered from all genome assem...
Table S7. NCBI accession numbers of the T. cruzi genomes and maxicircle assemblies. (DOCX 14 kb
Figure S5. Methodology for T. cruzi CCNV estimations. (A) The CCNV estimations were performed using ...
Figure S3. Read Depth Coverage of the chromosome 11 in the Y strain and clones. In this picture, the...
Figure S1. Maxicircle heterozygous SNPs. To test for evidences of mitochondrial heteroplasmy, we eva...
Figure S4. Competitive mapping of the mitochondrial reads to the three available maxicircle template...
Table S1 SNP data showing putative donor and recipient isolates for METIII. Sequences containing het...
Abstract Background Trypanosoma cruzi, the etiologic agent of Chagas disease, is currently divided i...
Table S2 SNP data showing putative donor and recipient isolates for LYT1. Sequences containing heter...
Figure S2 Phylogenetic incongruence between individual nuclear markers applied to 35 TcI Brazilian i...
Newly Annotated and Modified TcTS. (a) 735 TcTS genes annotated as “real”; full-length containing bo...
Table S1. Strain information. Table S2. Densitometry of PFGE. Table S3. Sequencing and genome statis...
Table S4. Ploidy estimations and statistic validation of all 41 chromosomes of the seven TcII field ...
Figure S2. Boxplot of the predicted ploidy of T. cruzi TcII field isolates. The predicted ploidy of ...
Table S3. T. cruzi CL Brener single-copy gene IDs from the 701 genes used to estimate nuclear genomi...
Table S2. T. cruzi CL Brener single-copy gene IDs from the 794 genes recovered from all genome assem...
Table S7. NCBI accession numbers of the T. cruzi genomes and maxicircle assemblies. (DOCX 14 kb
Figure S5. Methodology for T. cruzi CCNV estimations. (A) The CCNV estimations were performed using ...
Figure S3. Read Depth Coverage of the chromosome 11 in the Y strain and clones. In this picture, the...
Figure S1. Maxicircle heterozygous SNPs. To test for evidences of mitochondrial heteroplasmy, we eva...
Figure S4. Competitive mapping of the mitochondrial reads to the three available maxicircle template...
Table S1 SNP data showing putative donor and recipient isolates for METIII. Sequences containing het...
Abstract Background Trypanosoma cruzi, the etiologic agent of Chagas disease, is currently divided i...
Table S2 SNP data showing putative donor and recipient isolates for LYT1. Sequences containing heter...
Figure S2 Phylogenetic incongruence between individual nuclear markers applied to 35 TcI Brazilian i...
Newly Annotated and Modified TcTS. (a) 735 TcTS genes annotated as “real”; full-length containing bo...
Table S1. Strain information. Table S2. Densitometry of PFGE. Table S3. Sequencing and genome statis...