Additional file 9: Table S3. of Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell

Repertoire of Cdc48 in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages) and archaeplastida. A filled black circle denotes the presence of endoplasmic reticulum-associated protein degradation (ERAD) or symbiont-specific ERAD-like machinery (SELMA) Cdc48 in the host cell genome or in the nucleomorph (nm) genome. Note that the host cell genomes of the cryptophytes Chroomonas mesostigmatica, Cryptomonas paramecium, and Hemiselmis andersenii are not currently available (nd). Circles indicate the presence of a photosynthetically active plasmid of red algae origin (red) or of green algae (green); a black circle indicates the presence of a non-photosynthetic plastid remnant. (DOCX 43 kb