Additional file 2 of Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics

Additional file 6: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...

Additional file 9: Table S3. of Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell

Nickias Kienle (3485537)
Tobias Kloepper (3485543)
Dirk Fasshauer (3485540)

October 2016

Repertoire of Cdc48 in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages) and ...

Additional file 1 of Comparing complete organelle genomes of holoparasitic Christisonia kwangtungensis (Orabanchaceae) with its close relatives: how different are they?

Chi Zhang (9857)
Qianshi Lin (13815499)
Jiayin Zhang (1850089)
Zihao Huang (1591327)
Peng Nan (4889500)
Linfeng Li (281571)
Zhiping Song (662315)
Wenju Zhang (566234)
Ji Yang (114503)
Yuguo Wang (282010)

September 2022

Additional file 1: Figure S1. The plastid genome map of holoparasitic C. kwangtungensis. Genes label...

Additional file 1 of Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics

Jong Im Kim (9358922)
Goro Tanifuji (3362498)
Minseok Jeong (9358925)
Woongghi Shin (750566)
John M. Archibald (13930602)

October 2022

Additional file 1: Figure S1. Physical maps of nucleomorph chromosome 1 for three Cryptomonas specie...

Additional file 2: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S2. Hairpin structures wih palindromic sequence in cryptophyte mitochondrial genomes. The non...

Comparative Genomic Analysis of Cryptophyte Algae Plastid Genomes

Kattel, Prabhat

April 2021

Cryptophyte algae have four different genomes. Through secondary endosymbiosis, cryptophytes derived...

Additional file 4: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S4. Conservation of ribosomal protein gene organization. Gene order found in cryptophyte mito...

Additional file 3: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S3. All tRNAs wih palindromic sequences in cryptophyte mitochondrial genomes. The non-tRNA se...

Additional file 1: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S1. Overview of cryptophyte mitochondrial genomes. Linearized maps of the five novel complete...

Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Im Kim
Hwan Su Yoon
Gangman Yi
Woongghi Shin
John M. Archibald

April 2018

Abstract Background Cryptophytes are an ecologically important group of algae comprised of phototrop...

Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints on <it>rbc</it>L in <it>Cryptomonas </it>(Cryptophyceae)

Tran Hoang-Dung
Hoef-Emden Kerstin
Melkonian Michael

October 2005

Abstract Background Plastid-bearing cryptophytes like Cryptomonas contain four genomes in a cell, th...

Retrotransposons and Tandem Repeat Sequences in the Nuclear Genomes of Cryptomonad Algae

Sharen Bowman
John M. Archibald

February 2015

Abstract. The cryptomonads are an enigmatic group of unicellular eukaryotic algae that possess two n...

Going, Going, Not Quite Gone: Nucleomorphs as a Case Study in Nuclear Genome Reduction

John M. Archibald
Christopher
E. Lane

July 2015

Nucleomorphs are the relic nuclei of algal endosymbionts that became permanent fixtures inside nonph...

Going, Going, Not Quite Gone: Nucleomorphs as a Case Study in Nuclear Genome Reduction

John M. Archibald
Christopher
E. Lane

January 2009

Nucleomorphs are the relic nuclei of algal endosymbionts that became permanent fixtures inside nonph...

Additional file 2: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pseudopediastrum boryanum strain ML0410MN, GenBank KR026342...

Additional file 6: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...

Additional file 9: Table S3. of Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell

Nickias Kienle (3485537)
Tobias Kloepper (3485543)
Dirk Fasshauer (3485540)

October 2016

Repertoire of Cdc48 in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages) and ...

Additional file 1 of Comparing complete organelle genomes of holoparasitic Christisonia kwangtungensis (Orabanchaceae) with its close relatives: how different are they?

Chi Zhang (9857)
Qianshi Lin (13815499)
Jiayin Zhang (1850089)
Zihao Huang (1591327)
Peng Nan (4889500)
Linfeng Li (281571)
Zhiping Song (662315)
Wenju Zhang (566234)
Ji Yang (114503)
Yuguo Wang (282010)

September 2022

Additional file 1: Figure S1. The plastid genome map of holoparasitic C. kwangtungensis. Genes label...

Additional file 1 of Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics

Jong Im Kim (9358922)
Goro Tanifuji (3362498)
Minseok Jeong (9358925)
Woongghi Shin (750566)
John M. Archibald (13930602)

October 2022

Additional file 1: Figure S1. Physical maps of nucleomorph chromosome 1 for three Cryptomonas specie...

Additional file 2: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S2. Hairpin structures wih palindromic sequence in cryptophyte mitochondrial genomes. The non...

Comparative Genomic Analysis of Cryptophyte Algae Plastid Genomes

Kattel, Prabhat

April 2021

Cryptophyte algae have four different genomes. Through secondary endosymbiosis, cryptophytes derived...

Additional file 4: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S4. Conservation of ribosomal protein gene organization. Gene order found in cryptophyte mito...

Additional file 3: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S3. All tRNAs wih palindromic sequences in cryptophyte mitochondrial genomes. The non-tRNA se...

Additional file 1: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S1. Overview of cryptophyte mitochondrial genomes. Linearized maps of the five novel complete...

Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Im Kim
Hwan Su Yoon
Gangman Yi
Woongghi Shin
John M. Archibald

April 2018

Abstract Background Cryptophytes are an ecologically important group of algae comprised of phototrop...

Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints on <it>rbc</it>L in <it>Cryptomonas </it>(Cryptophyceae)

Tran Hoang-Dung
Hoef-Emden Kerstin
Melkonian Michael

October 2005

Abstract Background Plastid-bearing cryptophytes like Cryptomonas contain four genomes in a cell, th...

Retrotransposons and Tandem Repeat Sequences in the Nuclear Genomes of Cryptomonad Algae

Sharen Bowman
John M. Archibald

February 2015

Abstract. The cryptomonads are an enigmatic group of unicellular eukaryotic algae that possess two n...

Going, Going, Not Quite Gone: Nucleomorphs as a Case Study in Nuclear Genome Reduction

John M. Archibald
Christopher
E. Lane

July 2015

Nucleomorphs are the relic nuclei of algal endosymbionts that became permanent fixtures inside nonph...

Going, Going, Not Quite Gone: Nucleomorphs as a Case Study in Nuclear Genome Reduction

John M. Archibald
Christopher
E. Lane

January 2009

Nucleomorphs are the relic nuclei of algal endosymbionts that became permanent fixtures inside nonph...

Additional file 2: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pseudopediastrum boryanum strain ML0410MN, GenBank KR026342...

Additional file 6: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...

Additional file 9: Table S3. of Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell

Nickias Kienle (3485537)
Tobias Kloepper (3485543)
Dirk Fasshauer (3485540)

October 2016

Repertoire of Cdc48 in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages) and ...

Additional file 1 of Comparing complete organelle genomes of holoparasitic Christisonia kwangtungensis (Orabanchaceae) with its close relatives: how different are they?

Chi Zhang (9857)
Qianshi Lin (13815499)
Jiayin Zhang (1850089)
Zihao Huang (1591327)
Peng Nan (4889500)
Linfeng Li (281571)
Zhiping Song (662315)
Wenju Zhang (566234)
Ji Yang (114503)
Yuguo Wang (282010)

September 2022

Additional file 1: Figure S1. The plastid genome map of holoparasitic C. kwangtungensis. Genes label...

Additional file 2 of Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics

Abstract

Extracted data

Additional file 2 of Gene loss, pseudogenization, and independent genome reduction in non-photosynthetic species of Cryptomonas (Cryptophyceae) revealed by comparative nucleomorph genomics

Abstract

Extracted data

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