Tab separated table with systematic names, fastq filenames, age in the experiment and expected mutations to the strain from day 1 of the experiment, and indication of whether the node is a tip or internal node in the topology. (TXT 3 kb
Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...
Figure S6. Taxonomic composition of bacterial mock community samples pre-filtering (a) and post-filt...
Phylogenetic trees of the Bifidobacteriaceae family. Panel a display the 16S rRNA gene-based tree of...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
Spreadsheet with an overview of all 255 strains from the in vitro evolution experiment. The sequence...
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli NC_017641 used as reference....
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as reference...
List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold...
List of strain names in the 16S rRNA gene copy number reference database. a. For each strain, a RefS...
Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...
List of phylum names for the 28,977 high-quality 16S rRNA gene sequences in VITCOMIC2. (XLS 21Â kb
TOPD/FMTS nodal distance scores and SNPs evaluation. Genes are sorted according to the nodal distanc...
Phylogenetic trees. Package containing Newick and figure files of bacterial and archaeal phylogenies...
Figure S4. Neighbor-joining phylogenetic tree of the 20 vibrios genomes based on 16S rRNA gene. The ...
Phylogeny of PVC bacteria and phylogeny of Bacteroidetes-Chlorobi-Spirochaetes. The phylogenies of s...
Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...
Figure S6. Taxonomic composition of bacterial mock community samples pre-filtering (a) and post-filt...
Phylogenetic trees of the Bifidobacteriaceae family. Panel a display the 16S rRNA gene-based tree of...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
Spreadsheet with an overview of all 255 strains from the in vitro evolution experiment. The sequence...
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli NC_017641 used as reference....
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as reference...
List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold...
List of strain names in the 16S rRNA gene copy number reference database. a. For each strain, a RefS...
Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...
List of phylum names for the 28,977 high-quality 16S rRNA gene sequences in VITCOMIC2. (XLS 21Â kb
TOPD/FMTS nodal distance scores and SNPs evaluation. Genes are sorted according to the nodal distanc...
Phylogenetic trees. Package containing Newick and figure files of bacterial and archaeal phylogenies...
Figure S4. Neighbor-joining phylogenetic tree of the 20 vibrios genomes based on 16S rRNA gene. The ...
Phylogeny of PVC bacteria and phylogeny of Bacteroidetes-Chlorobi-Spirochaetes. The phylogenies of s...
Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...
Figure S6. Taxonomic composition of bacterial mock community samples pre-filtering (a) and post-filt...
Phylogenetic trees of the Bifidobacteriaceae family. Panel a display the 16S rRNA gene-based tree of...