Spreadsheet with an overview of all 255 strains from the in vitro evolution experiment. The sequenced strains are marked in bold. (XLSX 29 kb
Pan- and core-genome evolution of L. reuteri. A Evolution of the pan-genome for L. reuteri. After 20...
List of strain names in the 16S rRNA gene copy number reference database. a. For each strain, a RefS...
Excel spreadsheet (.xlsx) listing assembly statistics of the six sequenced genomes before and filter...
Tab separated table with systematic names, fastq filenames, age in the experiment and expected mutat...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli NC_017641 used as reference....
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as reference...
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
<p>Bacteria with full genome sequences and laboratory tests used in this study are listed with their...
Phylogeny of PVC bacteria and phylogeny of Bacteroidetes-Chlorobi-Spirochaetes. The phylogenies of s...
Whole-genome map of subcluster B14 phages. Represented as mentioned above. (PDF 24 kb
List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold...
Table S1. Strains representing other species of the family Ruminococcaceae, used for comparative pur...
Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...
Figure S8. Correlation between genome size and Ne for each lifestyle category. Genome size for a giv...
Pan- and core-genome evolution of L. reuteri. A Evolution of the pan-genome for L. reuteri. After 20...
List of strain names in the 16S rRNA gene copy number reference database. a. For each strain, a RefS...
Excel spreadsheet (.xlsx) listing assembly statistics of the six sequenced genomes before and filter...
Tab separated table with systematic names, fastq filenames, age in the experiment and expected mutat...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, E. coli NC_017641 used as reference....
a Tree inferred by NDtree, Z-score 1.96, Neighbor Joining tree, contigs from day 1 used as reference...
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
<p>Bacteria with full genome sequences and laboratory tests used in this study are listed with their...
Phylogeny of PVC bacteria and phylogeny of Bacteroidetes-Chlorobi-Spirochaetes. The phylogenies of s...
Whole-genome map of subcluster B14 phages. Represented as mentioned above. (PDF 24 kb
List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold...
Table S1. Strains representing other species of the family Ruminococcaceae, used for comparative pur...
Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...
Figure S8. Correlation between genome size and Ne for each lifestyle category. Genome size for a giv...
Pan- and core-genome evolution of L. reuteri. A Evolution of the pan-genome for L. reuteri. After 20...
List of strain names in the 16S rRNA gene copy number reference database. a. For each strain, a RefS...
Excel spreadsheet (.xlsx) listing assembly statistics of the six sequenced genomes before and filter...
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