<p>the y axis represents–log<sub>10</sub> (p values) and the x axis shows position within <i>MUC5B</i>. Red dotted lines indicate the Bonferroni correction level (-log<sub>10</sub> (0.05/1,553)), Points above the line are odds ratio values > 1, and below are odds ratio values < 1. Green dotted lines indicate the positions of significantly associated SNPs in single SNPs analyses. The “*” symbol by the SNP label indicates rare variants (MAF ≤ 0.0162). The LD heat map presents pairwise r<sup>2</sup> values within <i>MUC5B</i> based on the CADM study.</p
<p>The values in the map are the normalized measures of allelic association |D’| (<b>A</b>) and corr...
Iven. The black, blue, pink, and green lines represent the mean of the -log(-values) of the ten repl...
<p>A) Chromosome 5 near <i>TMEM161B</i> and <i>MEF2C</i>, B) Chromosome 17 on <i>SFRS2</i> and C) Ch...
<p>Results are depicted for T5, T6, and the T5-T6 difference. A nominal <i>P</i> ≤ 10<sup>–5</sup> i...
<p>(A) Association result for αT in a panel of 513 lines using 48,962 SNPs, showing the physical map...
<p>(a–c) Upper panel; <i>P</i>-values of genotyped SNPs (circle) and imputed SNPs (cross) are plotte...
<p>Odds ratios (OR) and 95% confidence intervals (CI) are relative to the allele on the forward stra...
<p>Panels on the left are regional association plots for all variants in the MHC region; each diamon...
Horizontal lines represent the 4-SNP windows. X-axis direction shows the SNPs genotyped in the regio...
<p>Significant p-values are in italic bold. Common Haplotypes are shown, if frequency more than 2.5%...
a<p>Frequencies are shown in parentheses.</p>b<p>Significant <i>P</i> values (<0.05) are in bold.</p...
a<p>The sequence of the SNPs in the Haplotypes was rs2227983, rs2072454, rs17337023, rs1050171, rs11...
<p>NSNP; Number of SNPs in this haplotype.</p><p>NHAP; Number of common haplotypes (f>0.01).</p><p>S...
<p><b>Note:</b> MAF, minor allele frequency. UTR, untranslated region;</p>a<p>Odds ratio followed by...
<p>The -log<sub>10</sub> (p-values) for each SNP (y-axis) are plotted against their chromosomal posi...
<p>The values in the map are the normalized measures of allelic association |D’| (<b>A</b>) and corr...
Iven. The black, blue, pink, and green lines represent the mean of the -log(-values) of the ten repl...
<p>A) Chromosome 5 near <i>TMEM161B</i> and <i>MEF2C</i>, B) Chromosome 17 on <i>SFRS2</i> and C) Ch...
<p>Results are depicted for T5, T6, and the T5-T6 difference. A nominal <i>P</i> ≤ 10<sup>–5</sup> i...
<p>(A) Association result for αT in a panel of 513 lines using 48,962 SNPs, showing the physical map...
<p>(a–c) Upper panel; <i>P</i>-values of genotyped SNPs (circle) and imputed SNPs (cross) are plotte...
<p>Odds ratios (OR) and 95% confidence intervals (CI) are relative to the allele on the forward stra...
<p>Panels on the left are regional association plots for all variants in the MHC region; each diamon...
Horizontal lines represent the 4-SNP windows. X-axis direction shows the SNPs genotyped in the regio...
<p>Significant p-values are in italic bold. Common Haplotypes are shown, if frequency more than 2.5%...
a<p>Frequencies are shown in parentheses.</p>b<p>Significant <i>P</i> values (<0.05) are in bold.</p...
a<p>The sequence of the SNPs in the Haplotypes was rs2227983, rs2072454, rs17337023, rs1050171, rs11...
<p>NSNP; Number of SNPs in this haplotype.</p><p>NHAP; Number of common haplotypes (f>0.01).</p><p>S...
<p><b>Note:</b> MAF, minor allele frequency. UTR, untranslated region;</p>a<p>Odds ratio followed by...
<p>The -log<sub>10</sub> (p-values) for each SNP (y-axis) are plotted against their chromosomal posi...
<p>The values in the map are the normalized measures of allelic association |D’| (<b>A</b>) and corr...
Iven. The black, blue, pink, and green lines represent the mean of the -log(-values) of the ten repl...
<p>A) Chromosome 5 near <i>TMEM161B</i> and <i>MEF2C</i>, B) Chromosome 17 on <i>SFRS2</i> and C) Ch...