Additional file 2: Figure S2. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

Publication date

May 2017

DOI

10.6084/m9.figshare.c.3769610_d2.v1

Abstract

Correlation of n-cirDNA, m-cirDNA, n-csbDNA, m-csbDNA, ACPA, CRP, and RF between each other and with age of healthy subjects. (DOC 219Â kb

Extracted data

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Additional file 2: Figure S2. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

Open link

Publication date

May 2017

DOI

10.6084/m9.figshare.c.3769610_d2.v1

Abstract

Correlation of n-cirDNA, m-cirDNA, n-csbDNA, m-csbDNA, ACPA, CRP, and RF between each other and with age of healthy subjects. (DOC 219Â kb

Extracted data

Tsutomu Takeuchi (163145)
Nobuyuki Miyasaka (12600)
Takashi Inui (821466)
Toshiro Yano (4411327)
Toru Yoshinari (2584039)
Tohru Abe (4411324)
Takao Koike (186334)

September 2017

Stratification of patients based on RF and anti-CCP titers at week 0. (PDF 419 kb

Additional file 2 of Role of DNA dioxygenase Ten-Eleven translocation 3 (TET3) in rheumatoid arthritis progression

Akio Kawabe (8950892)
Kaoru Yamagata (669806)
Shigeaki Kato (294800)
Kazuhisa Nakano (5689625)
Kei Sakata (2602270)
Yu-ichi Tsukada (13814309)
Koichiro Ohmura (137137)
Shingo Nakayamada (839502)
Yoshiya Tanaka (8950895)

September 2022

Additional file 2: Supplementary Table S1. TET3-mediated upregulated genes. Supplementary Table S2. ...

Additional file 1: Figure S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Correlation of n-cirDNA, m-cirDNA, n-csbDNA, m-csbDNA, ACPA, CRP, and RF between each other and with...

Additional file 3: Table S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Comparison of cir-nDNA, m-cirDNA, n-csbDNA, and m-csbDNA concentration in the blood from patients wi...

Additional file 5: Table S3. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Variable importance evaluated using random forests classification algorithm. (DOC 28Â kb

Additional file 2: of A specific anti-citrullinated protein antibody profile identifies a group of rheumatoid arthritis patients with a toll-like receptor 4-mediated disease

Eric Hatterer (270252)
Limin Shang (412524)
Pierre Simonet (3505793)
Suzanne Herren (3505790)
Bruno Daubeuf (3505784)
StĂŠphanie Teixeira (3505787)
James Reilly (3319563)
Greg Elson (765745)
Robert Nelson (3447176)
Cem Gabay (642)
Jeremy Sokolove (162190)
Iain McInnes (2063845)
Marie Kosco-Vilbois (139757)
Walter Ferlin (765744)
Emmanuel Monnet (3505799)
Cristina De Min (3505796)

October 2016

Methodological approach used to identify NI-0101 responder samples and biomarkers. RA patient strati...

Additional file 2: of Increased DNA methylation variability in rheumatoid arthritis-discordant monozygotic twins

Amy Webster (3565940)
Darren Plant (176475)
Simone Ecker (279216)
Flore Zufferey (388583)
Jordana Bell (667256)
Andrew Feber (3559562)
Dirk Paul (3428945)
Stephan Beck (5246)
Anne Barton (23499)
Frances Williams (830130)
Jane Worthington (23502)

September 2018

Table S1. Full list of differentially variable positions (n = 1171) between RA-affected and non-RA t...

Additional file 2: Figure S2. of IL2RA is associated with persistence of rheumatoid arthritis

H.W. van Steenbergen (3573368)
J.A.B. van Nies (3573359)
A. Ruyssen-Witrand (3573362)
T.W.J. Huizinga (3573356)
Al. Cantagrel (3573365)
F. Berenbaum (3573353)
A.H.M. van der Helm-van Mil (3573371)

September 2015

Showing genetic variants in relation to achieving DMARD-free sustained remission in ACPA-positive an...

Additional file 2: of An investigation of the added value of an ACPA multiplex assay in an early rheumatoid arthritis setting

Jurgen van Heemst (3562772)
Leendert Trouw (3446432)
Leonor Nogueira (68003)
Hanna van Steenbergen (3496592)
Annette van der Helm-van Mil (3496601)
Cornelia Allaart (3398666)
Guy Serre (48155)
Rikard Holmdahl (901)
Tom Huizinga (3398660)
RenĂŠ Toes (3562775)
Diane van der Woude (3562766)

October 2015

Baseline characteristics of anti-CCP-2-negative RA patients. Baseline characteristics of anti-CCP-2-...

Additional file 4: Table S1. of Antibodies directed against endogenous and exogenous citrullinated antigens pre-date the onset of rheumatoid arthritis

Linda Johansson (171475)
Federico Pratesi (3506732)
Mikael Brink (3446441)
Lisbeth Ärlestig (424539)
Claudia D’Amato (3567737)
Debora Bartaloni (3567734)
Paola Migliorini (361490)
Solbritt Rantapää-Dahlqvist (3226431)

June 2016

Significant single nucleotide polymorphism (SNP) variants associated with anti-HCP1 positivity in pa...

Additional file 1: Figure S1. of IL2RA is associated with persistence of rheumatoid arthritis

H.W. van Steenbergen (3573368)
J.A.B. van Nies (3573359)
A. Ruyssen-Witrand (3573362)
T.W.J. Huizinga (3573356)
Al. Cantagrel (3573365)
F. Berenbaum (3573353)
A.H.M. van der Helm-van Mil (3573371)

September 2015

Showing SE alleles in HLA-DRB1 in relation to achieving DMARD-free sustained remission in RA patient...

Additional file 1: Table S1. of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

Klementy Shchetynsky (3710995)
Lina-Marcella Diaz-Gallo (3710998)
Lasse Folkersen (109487)
Aase Hensvold (3505412)
Anca Catrina (246690)
Louise Berg (54461)
Lars Klareskog (4149)
Leonid Padyukov (39206)

February 2017

Clinical features of studied groups of patients with RA and healthy controls. Table S2 The expressio...

Additional file 1: of Cysteine-rich 61 (Cyr61): a biomarker reflecting disease activity in rheumatoid arthritis

Yong Fan (212624)
Xinlei Yang (434378)
Juan Zhao (109151)
Xiaoying Sun (2505013)
Wenhui Xie (495309)
Yanrong Huang (807712)
Guangtao Li (1455445)
Yanjie Hao (3358529)
Zhuoli Zhang (155370)

May 2019

Table S1. Univariate logistic regression analysis for associated factors to predict ACR20 response a...

Tsutomu Takeuchi (163145)
Nobuyuki Miyasaka (12600)
Takashi Inui (821466)
Toshiro Yano (4411327)
Toru Yoshinari (2584039)
Tohru Abe (4411324)
Takao Koike (186334)

September 2017

Stratification of patients based on RF and anti-CCP titers at week 0. (PDF 419 kb

Additional file 2 of Role of DNA dioxygenase Ten-Eleven translocation 3 (TET3) in rheumatoid arthritis progression

Akio Kawabe (8950892)
Kaoru Yamagata (669806)
Shigeaki Kato (294800)
Kazuhisa Nakano (5689625)
Kei Sakata (2602270)
Yu-ichi Tsukada (13814309)
Koichiro Ohmura (137137)
Shingo Nakayamada (839502)
Yoshiya Tanaka (8950895)

September 2022

Additional file 2: Supplementary Table S1. TET3-mediated upregulated genes. Supplementary Table S2. ...

Additional file 1: Figure S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Correlation of n-cirDNA, m-cirDNA, n-csbDNA, m-csbDNA, ACPA, CRP, and RF between each other and with...

Additional file 3: Table S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Comparison of cir-nDNA, m-cirDNA, n-csbDNA, and m-csbDNA concentration in the blood from patients wi...

Additional file 5: Table S3. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Variable importance evaluated using random forests classification algorithm. (DOC 28Â kb

Additional file 2: of A specific anti-citrullinated protein antibody profile identifies a group of rheumatoid arthritis patients with a toll-like receptor 4-mediated disease

Eric Hatterer (270252)
Limin Shang (412524)
Pierre Simonet (3505793)
Suzanne Herren (3505790)
Bruno Daubeuf (3505784)
StĂŠphanie Teixeira (3505787)
James Reilly (3319563)
Greg Elson (765745)
Robert Nelson (3447176)
Cem Gabay (642)
Jeremy Sokolove (162190)
Iain McInnes (2063845)
Marie Kosco-Vilbois (139757)
Walter Ferlin (765744)
Emmanuel Monnet (3505799)
Cristina De Min (3505796)

October 2016

Methodological approach used to identify NI-0101 responder samples and biomarkers. RA patient strati...

Additional file 2: of Increased DNA methylation variability in rheumatoid arthritis-discordant monozygotic twins

Amy Webster (3565940)
Darren Plant (176475)
Simone Ecker (279216)
Flore Zufferey (388583)
Jordana Bell (667256)
Andrew Feber (3559562)
Dirk Paul (3428945)
Stephan Beck (5246)
Anne Barton (23499)
Frances Williams (830130)
Jane Worthington (23502)

September 2018

Table S1. Full list of differentially variable positions (n = 1171) between RA-affected and non-RA t...

Additional file 2: Figure S2. of IL2RA is associated with persistence of rheumatoid arthritis

H.W. van Steenbergen (3573368)
J.A.B. van Nies (3573359)
A. Ruyssen-Witrand (3573362)
T.W.J. Huizinga (3573356)
Al. Cantagrel (3573365)
F. Berenbaum (3573353)
A.H.M. van der Helm-van Mil (3573371)

September 2015

Showing genetic variants in relation to achieving DMARD-free sustained remission in ACPA-positive an...

Additional file 2: of An investigation of the added value of an ACPA multiplex assay in an early rheumatoid arthritis setting

Jurgen van Heemst (3562772)
Leendert Trouw (3446432)
Leonor Nogueira (68003)
Hanna van Steenbergen (3496592)
Annette van der Helm-van Mil (3496601)
Cornelia Allaart (3398666)
Guy Serre (48155)
Rikard Holmdahl (901)
Tom Huizinga (3398660)
RenĂŠ Toes (3562775)
Diane van der Woude (3562766)

October 2015

Baseline characteristics of anti-CCP-2-negative RA patients. Baseline characteristics of anti-CCP-2-...

Additional file 4: Table S1. of Antibodies directed against endogenous and exogenous citrullinated antigens pre-date the onset of rheumatoid arthritis

Linda Johansson (171475)
Federico Pratesi (3506732)
Mikael Brink (3446441)
Lisbeth Ärlestig (424539)
Claudia D’Amato (3567737)
Debora Bartaloni (3567734)
Paola Migliorini (361490)
Solbritt Rantapää-Dahlqvist (3226431)

June 2016

Significant single nucleotide polymorphism (SNP) variants associated with anti-HCP1 positivity in pa...

Additional file 1: Figure S1. of IL2RA is associated with persistence of rheumatoid arthritis

H.W. van Steenbergen (3573368)
J.A.B. van Nies (3573359)
A. Ruyssen-Witrand (3573362)
T.W.J. Huizinga (3573356)
Al. Cantagrel (3573365)
F. Berenbaum (3573353)
A.H.M. van der Helm-van Mil (3573371)

September 2015

Showing SE alleles in HLA-DRB1 in relation to achieving DMARD-free sustained remission in RA patient...

Additional file 1: Table S1. of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

Klementy Shchetynsky (3710995)
Lina-Marcella Diaz-Gallo (3710998)
Lasse Folkersen (109487)
Aase Hensvold (3505412)
Anca Catrina (246690)
Louise Berg (54461)
Lars Klareskog (4149)
Leonid Padyukov (39206)

February 2017

Clinical features of studied groups of patients with RA and healthy controls. Table S2 The expressio...

Additional file 1: of Cysteine-rich 61 (Cyr61): a biomarker reflecting disease activity in rheumatoid arthritis

Yong Fan (212624)
Xinlei Yang (434378)
Juan Zhao (109151)
Xiaoying Sun (2505013)
Wenhui Xie (495309)
Yanrong Huang (807712)
Guangtao Li (1455445)
Yanjie Hao (3358529)
Zhuoli Zhang (155370)

May 2019

Table S1. Univariate logistic regression analysis for associated factors to predict ACR20 response a...

Tsutomu Takeuchi (163145)
Nobuyuki Miyasaka (12600)
Takashi Inui (821466)
Toshiro Yano (4411327)
Toru Yoshinari (2584039)
Tohru Abe (4411324)
Takao Koike (186334)

September 2017

Stratification of patients based on RF and anti-CCP titers at week 0. (PDF 419 kb

Additional file 2 of Role of DNA dioxygenase Ten-Eleven translocation 3 (TET3) in rheumatoid arthritis progression

Akio Kawabe (8950892)
Kaoru Yamagata (669806)
Shigeaki Kato (294800)
Kazuhisa Nakano (5689625)
Kei Sakata (2602270)
Yu-ichi Tsukada (13814309)
Koichiro Ohmura (137137)
Shingo Nakayamada (839502)
Yoshiya Tanaka (8950895)

September 2022

Additional file 2: Supplementary Table S1. TET3-mediated upregulated genes. Supplementary Table S2. ...

Additional file 2: Figure S2. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Abstract

Extracted data

Additional file 2: Figure S2. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Abstract

Extracted data

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