Supplementary Table 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Supplementary material 15 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 36 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S6. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 9 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Maximum likelihood tree inferred using Clustal-O alignment of the complete datase

Supplementary Table 2 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Taxonomic composition and relative abundance (% of the total number of specimens) of nematode specie...

Supplementary Table 8 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Comparison of the results produced by different taxonomy assignment approaches and distribution of d...

Supplementary Table 6 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of tree-based taxonomy assignment using complete and partitioned query dataset

Supplementary Table 1 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

GenBank accession numbers and classification of sequences used in reference datasets for the tree-ba...

Supplementary Table 7 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of phylogeny-based taxonomy assignment using mothur and PaPaRa-based alignments

Supplementary Table 5 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of alignment-based taxonomy assignment using LCAClassifier of CREST against built-in referen...

Supplementary Table 4 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of alignment-based taxonomy assignment using BLASTN 2.5.0+ against the nucleotide collection...

Supplementary Figure 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Examples of cumulative placement of two different OTUs within the family Thoracostomopsidae that pro...

Supplementary material 8 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S2. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 1 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S1. GenBank accession numbers and classification of sequences used in present analysi

Supplementary material 43 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S7. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 22 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S4. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 15 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 36 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S6. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 9 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Maximum likelihood tree inferred using Clustal-O alignment of the complete datase

Supplementary Table 2 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Taxonomic composition and relative abundance (% of the total number of specimens) of nematode specie...

Supplementary Table 8 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Comparison of the results produced by different taxonomy assignment approaches and distribution of d...

Supplementary Table 6 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of tree-based taxonomy assignment using complete and partitioned query dataset

Supplementary Table 1 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

GenBank accession numbers and classification of sequences used in reference datasets for the tree-ba...

Supplementary Table 7 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of phylogeny-based taxonomy assignment using mothur and PaPaRa-based alignments

Supplementary Table 5 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of alignment-based taxonomy assignment using LCAClassifier of CREST against built-in referen...

Supplementary Table 4 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Results of alignment-based taxonomy assignment using BLASTN 2.5.0+ against the nucleotide collection...

Supplementary Figure 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Examples of cumulative placement of two different OTUs within the family Thoracostomopsidae that pro...

Supplementary material 8 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S2. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 1 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S1. GenBank accession numbers and classification of sequences used in present analysi

Supplementary material 43 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S7. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 22 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S4. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 15 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 36 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S6. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 9 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Maximum likelihood tree inferred using Clustal-O alignment of the complete datase

Supplementary Table 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Abstract

Extracted data

Supplementary Table 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Abstract

Extracted data

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