Examples of cumulative placement of two different OTUs within the family Thoracostomopsidae that provide reliable identification of OTUs to the family-level taxonomic categories (branch length not representative). A: Part of the reference phylogeny with labelled clades (<i>i463-i477</i>) and bootstrap support. B: Placements of HE3.SSU124287 in clades <i>i464</i> (probability 0.333433), <i>i465</i> (probability 0.333132) and <i>i466</i> (probability 0.333435) gives cumulative probability higher than the required threshold of 0.95. C: Placements of HF9.SSU17250 in clades <i>i464</i> (probability 0.924697) and <i>i466</i> (probability 0.037675) gives cumulative probability higher than the required threshold of 0.95
Metabarcoding is becoming a common tool used to assess and compare diversity of organisms in environ...
Table S2. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...
Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...
Comparison of the results produced by different taxonomy assignment approaches and distribution of d...
Taxonomic composition and relative abundance (% of the total number of specimens) of nematode specie...
Taxonomic composition and relative abundance (% of the total number of specimens) of nematode specie...
Results of phylogeny-based taxonomy assignment using mothur and PaPaRa-based alignments
Results of tree-based taxonomy assignment using complete and partitioned query dataset
GenBank accession numbers and classification of sequences used in reference datasets for the tree-ba...
Results of alignment-based taxonomy assignment using BLASTN 2.5.0+ against the nucleotide collection...
Results of alignment-based taxonomy assignment using LCAClassifier of CREST against built-in referen...
Table S7. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...
Table S5. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...
Table S4. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...
Table S6. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...
Metabarcoding is becoming a common tool used to assess and compare diversity of organisms in environ...
Table S2. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...
Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...
Comparison of the results produced by different taxonomy assignment approaches and distribution of d...
Taxonomic composition and relative abundance (% of the total number of specimens) of nematode specie...
Taxonomic composition and relative abundance (% of the total number of specimens) of nematode specie...
Results of phylogeny-based taxonomy assignment using mothur and PaPaRa-based alignments
Results of tree-based taxonomy assignment using complete and partitioned query dataset
GenBank accession numbers and classification of sequences used in reference datasets for the tree-ba...
Results of alignment-based taxonomy assignment using BLASTN 2.5.0+ against the nucleotide collection...
Results of alignment-based taxonomy assignment using LCAClassifier of CREST against built-in referen...
Table S7. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...
Table S5. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...
Table S4. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...
Table S6. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...
Metabarcoding is becoming a common tool used to assess and compare diversity of organisms in environ...
Table S2. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...
Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...