Supplementary material 36 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach

Holovachov, Oleksandr

January 2016

Systematics of Swedish free-living nematodes of the orders Desmodorida and Araeolaimid

Figure 2 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Figure 2 - Ranges of identity scores of furthest ingroup taxon and nearest outgroup taxon a...

Supplementary Figure 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Examples of cumulative placement of two different OTUs within the family Thoracostomopsidae that pro...

Supplementary material 22 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S4. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 8 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S2. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 43 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S7. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 29 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S5. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 15 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 9 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Maximum likelihood tree inferred using Clustal-O alignment of the complete datase

Supplementary material 28 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Maximum likelihood tree inferred using SILVA-based alignment of the "filtered" datase

Supplementary material 1 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S1. GenBank accession numbers and classification of sequences used in present analysi

Supplementary material 1 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Table S1. GenBank accession numbers and classification of sequences used in present analysis

Supplementary material 2 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Table S2. Variability of maximum alignment score and identity score for the nearest ingroup, furthes...

Supplementary material 3 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Table S3. Variability of maximum alignment score and identity score for the nearest ingroup, furthes...

Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach

Holovachov, Oleksandr

September 2016

Metabarcoding is becoming a common tool used to assess and compare diversity of organisms in environ...

Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach

Holovachov, Oleksandr

January 2016

Systematics of Swedish free-living nematodes of the orders Desmodorida and Araeolaimid

Figure 2 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Figure 2 - Ranges of identity scores of furthest ingroup taxon and nearest outgroup taxon a...

Supplementary Figure 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Examples of cumulative placement of two different OTUs within the family Thoracostomopsidae that pro...

Supplementary material 22 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S4. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 8 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S2. Resolution and bootstrap support (for monophyletic clades) of nematode families based on N...

Supplementary material 43 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S7. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 29 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S5. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 15 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S3. Resolution and bootstrap support (for monophyletic clades) of nematode families based on M...

Supplementary material 9 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Maximum likelihood tree inferred using Clustal-O alignment of the complete datase

Supplementary material 28 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Maximum likelihood tree inferred using SILVA-based alignment of the "filtered" datase

Supplementary material 1 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Holovachov, Oleksandr

September 2016

Table S1. GenBank accession numbers and classification of sequences used in present analysi

Supplementary material 1 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Table S1. GenBank accession numbers and classification of sequences used in present analysis

Supplementary material 2 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Table S2. Variability of maximum alignment score and identity score for the nearest ingroup, furthes...

Supplementary material 3 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Table S3. Variability of maximum alignment score and identity score for the nearest ingroup, furthes...

Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach

Holovachov, Oleksandr

September 2016

Metabarcoding is becoming a common tool used to assess and compare diversity of organisms in environ...

Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach

Holovachov, Oleksandr

January 2016

Systematics of Swedish free-living nematodes of the orders Desmodorida and Araeolaimid

Figure 2 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach. Biodiversity Data Journal 4: e10647. https://doi.org/10.3897/BDJ.4.e10647

Holovachov, Oleksandr

November 2016

Figure 2 - Ranges of identity scores of furthest ingroup taxon and nearest outgroup taxon a...

Supplementary Figure 3 from Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes

Oleksandr Holovachov (4334932)
Quiterie Haenel (4334935)
Sarah J. Bourlat (4334929)
Ulf Jondelius (175718)

August 2017

Examples of cumulative placement of two different OTUs within the family Thoracostomopsidae that pro...

Supplementary material 36 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Abstract

Extracted data

Supplementary material 36 from: Holovachov O (2016) Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach. Biodiversity Data Journal 4: e10021. https://doi.org/10.3897/BDJ.4.e10021

Abstract

Extracted data

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