Additional file 1: Table S1. of Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization

Additional file 1: of Genome sequences of two closely related strains of Escherichia coli K-12 GM4792

Yan-Cong Zhang (3495206)
Yan Zhang (8098)
Bi-Ru Zhu (3495203)
Bo-Wen Zhang (849406)
Chuan Ni (238144)
Da-Yong Zhang (16644)
Ying Huang (53474)
Erli Pang (416861)
Kui Lin (16645)

December 2015

Supplementary Tables and Figures. Table S1. Genomic differences between E. coli GM4792 Lac+ and Lac-...

Additional file 3: of High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

BjĂ¸rn-Arne Lindstedt (6032030)
Misti Finton (6032021)
Davide Porcellato (5016440)
Lin Brandal (3571076)

November 2018

FHI-NMBU-03 SNPtree03 slanted. The image shows results from comparing the genome of FHI-NMBU-03 with...

Additional file 1: of Characterization of an NDM-5 carbapenemase-producing Escherichia coli ST156 isolate from a poultry farm in Zhejiang, China

Biao Tang (3567593)
Jiang Chang (119863)
Liujie Cao (6637439)
Qixia Luo (401575)
Hao Xu (6530)
Wentao Lyu (6637442)
Mingrong Qian (413865)
Xiaofeng Ji (331155)
Qiaoyan Zhang (488204)
Xiaodong Xia (1430395)
Hua Yang (120668)

April 2019

Table S1. The gene mutation on the chromosome of strain ECCRA-119. Table S2. Virulence factors of st...

Additional file 2: of Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

Vijay Sharma (651200)
Suryatej Akavaram (6441005)
Robert Schaut (6441008)
Darrell Bayles (3468284)

March 2019

Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...

Additional file 1: of Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

Vijay Sharma (651200)
Suryatej Akavaram (6441005)
Robert Schaut (6441008)
Darrell Bayles (3468284)

March 2019

Table S2. Sequence length and location of chromosomal regions in two reference strains exhibiting ho...

Additional file 6: of Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

Vijay Sharma (651200)
Suryatej Akavaram (6441005)
Robert Schaut (6441008)
Darrell Bayles (3468284)

March 2019

Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...

Additional file 2: of Attack of the clones: whole genome-based characterization of two closely related enterohemorrhagic Escherichia coli O26 epidemic lineages

Lucia Karnisova (5708015)
Monika Marejkova (5708018)
Hana Hrbackova (4682806)
Alexander Mellmann (72273)
Helge Karch (72277)
Angelika Fruth (214889)
Pavel Drevinek (23044)
Kveta Blahova (5708021)
Martina Bielaszewska (79970)
Jaroslav Nunvar (2938236)

September 2018

Figure S1. Core genome-derived phylogeny of 159 E. coli O26 isolates. The phylogram (inferred using ...

Additional file 1: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb

Additional file 1: of Genome analysis of E. coli isolated from Crohnâs disease patients

Daria Rakitina (104963)
Alexander Manolov (4259773)
Alexandra Kanygina (3455015)
Sofya Garushyants (4259776)
Julia Baikova (4259746)
Dmitry Alexeev (1535380)
Valentina Ladygina (2131024)
Elena Kostryukova (3455012)
Andrei Larin (4259758)
Tatiana Semashko (3547331)
Irina Karpova (3606446)
Vladislav Babenko (4259743)
Ruzilya Ismagilova (4259761)
Sergei Malanin (4259740)
Mikhail Gelfand (4027)
Elena Ilina (741179)
Roman Gorodnichev (4259749)
Eugenia Lisitsyna (4259770)
Gennady Aleshkin (4259782)
Petr Scherbakov (4259764)
Igor Khalif (4259752)
Marina Shapina (4259755)
Igor Maev (4259779)
Dmitry Andreev (4259767)
Vadim Govorun (2131033)

July 2017

Strains used for the comparative analysis. (A) Strains used for the phylogenetic analysis. Character...

Additional file 1: of Gene duplications in the E. coli genome: common themes among pathotypes

Manuel Bernabeu (5078432)
José Sánchez-Herrero (6627119)
Pol Huedo (427090)
Alejandro Prieto (5078429)
Mário Hüttener (5078435)
Julio Rozas (42168)
Antonio Juárez (196754)

April 2019

Table S1. List of E. coli strains whose genomes have been used. Table S2. Distribution of genes from...

Additional file 2: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S2. A pairwise genome comparison matrix of SNP differences for E. coli ST10 clonal complex. (X...

Additional file 1: of Comparative genomic analysis of 127 Escherichia coli strains isolated from domestic animals with diarrhea in China

Fang Tang (116243)
Juanfang Wang (5106413)
Dezhi Li (288515)
Song Gao (131209)
Jianluan Ren (3522614)
Liqing Ma (666491)
Fei Liu (21082)
Xiangkai Zhuge (3522617)
Genqiang Yan (6456665)
Yan Lu (32611)
Jianjun Dai (560787)

March 2019

Table S1. Strains information. Host, collection year, geographical location, sample type, MLST type,...

Additional file 2: of Gene duplications in the E. coli genome: common themes among pathotypes

Manuel Bernabeu (5078432)
José Sánchez-Herrero (6627119)
Pol Huedo (427090)
Alejandro Prieto (5078429)
Mário Hüttener (5078435)
Julio Rozas (42168)
Antonio Juárez (196754)

April 2019

DNA sequences of the genes comprising the three shared families identified in the exclusive core gen...

Additional file 1: Table S1. of Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

Canying Liu (3567590)
Huajun Zheng (38118)
Minjun Yang (120481)
Zhuofei Xu (38107)
Xiangru Wang (3196767)
Liuya Wei (3567596)
Biao Tang (3567593)
Feng Liu (72874)
Yanyan Zhang (1462111)
Yi Ding (172783)
Xibiao Tang (3567599)
Bin Wu (138543)
Timothy Johnson (139876)
Huanchun Chen (38125)
Chen Tan (651657)

September 2015

Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 1: of Genome sequences of two closely related strains of Escherichia coli K-12 GM4792

Yan-Cong Zhang (3495206)
Yan Zhang (8098)
Bi-Ru Zhu (3495203)
Bo-Wen Zhang (849406)
Chuan Ni (238144)
Da-Yong Zhang (16644)
Ying Huang (53474)
Erli Pang (416861)
Kui Lin (16645)

December 2015

Supplementary Tables and Figures. Table S1. Genomic differences between E. coli GM4792 Lac+ and Lac-...

Additional file 3: of High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

BjĂ¸rn-Arne Lindstedt (6032030)
Misti Finton (6032021)
Davide Porcellato (5016440)
Lin Brandal (3571076)

November 2018

FHI-NMBU-03 SNPtree03 slanted. The image shows results from comparing the genome of FHI-NMBU-03 with...

Additional file 1: of Characterization of an NDM-5 carbapenemase-producing Escherichia coli ST156 isolate from a poultry farm in Zhejiang, China

Biao Tang (3567593)
Jiang Chang (119863)
Liujie Cao (6637439)
Qixia Luo (401575)
Hao Xu (6530)
Wentao Lyu (6637442)
Mingrong Qian (413865)
Xiaofeng Ji (331155)
Qiaoyan Zhang (488204)
Xiaodong Xia (1430395)
Hua Yang (120668)

April 2019

Table S1. The gene mutation on the chromosome of strain ECCRA-119. Table S2. Virulence factors of st...

Additional file 2: of Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

Vijay Sharma (651200)
Suryatej Akavaram (6441005)
Robert Schaut (6441008)
Darrell Bayles (3468284)

March 2019

Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...

Additional file 1: of Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

Vijay Sharma (651200)
Suryatej Akavaram (6441005)
Robert Schaut (6441008)
Darrell Bayles (3468284)

March 2019

Table S2. Sequence length and location of chromosomal regions in two reference strains exhibiting ho...

Additional file 6: of Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

Vijay Sharma (651200)
Suryatej Akavaram (6441005)
Robert Schaut (6441008)
Darrell Bayles (3468284)

March 2019

Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...

Additional file 2: of Attack of the clones: whole genome-based characterization of two closely related enterohemorrhagic Escherichia coli O26 epidemic lineages

Lucia Karnisova (5708015)
Monika Marejkova (5708018)
Hana Hrbackova (4682806)
Alexander Mellmann (72273)
Helge Karch (72277)
Angelika Fruth (214889)
Pavel Drevinek (23044)
Kveta Blahova (5708021)
Martina Bielaszewska (79970)
Jaroslav Nunvar (2938236)

September 2018

Figure S1. Core genome-derived phylogeny of 159 E. coli O26 isolates. The phylogram (inferred using ...

Additional file 1: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb

Additional file 1: of Genome analysis of E. coli isolated from Crohnâs disease patients

Daria Rakitina (104963)
Alexander Manolov (4259773)
Alexandra Kanygina (3455015)
Sofya Garushyants (4259776)
Julia Baikova (4259746)
Dmitry Alexeev (1535380)
Valentina Ladygina (2131024)
Elena Kostryukova (3455012)
Andrei Larin (4259758)
Tatiana Semashko (3547331)
Irina Karpova (3606446)
Vladislav Babenko (4259743)
Ruzilya Ismagilova (4259761)
Sergei Malanin (4259740)
Mikhail Gelfand (4027)
Elena Ilina (741179)
Roman Gorodnichev (4259749)
Eugenia Lisitsyna (4259770)
Gennady Aleshkin (4259782)
Petr Scherbakov (4259764)
Igor Khalif (4259752)
Marina Shapina (4259755)
Igor Maev (4259779)
Dmitry Andreev (4259767)
Vadim Govorun (2131033)

July 2017

Strains used for the comparative analysis. (A) Strains used for the phylogenetic analysis. Character...

Additional file 1: of Gene duplications in the E. coli genome: common themes among pathotypes

Manuel Bernabeu (5078432)
José Sánchez-Herrero (6627119)
Pol Huedo (427090)
Alejandro Prieto (5078429)
Mário Hüttener (5078435)
Julio Rozas (42168)
Antonio Juárez (196754)

April 2019

Table S1. List of E. coli strains whose genomes have been used. Table S2. Distribution of genes from...

Additional file 2: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S2. A pairwise genome comparison matrix of SNP differences for E. coli ST10 clonal complex. (X...

Additional file 1: of Comparative genomic analysis of 127 Escherichia coli strains isolated from domestic animals with diarrhea in China

Fang Tang (116243)
Juanfang Wang (5106413)
Dezhi Li (288515)
Song Gao (131209)
Jianluan Ren (3522614)
Liqing Ma (666491)
Fei Liu (21082)
Xiangkai Zhuge (3522617)
Genqiang Yan (6456665)
Yan Lu (32611)
Jianjun Dai (560787)

March 2019

Table S1. Strains information. Host, collection year, geographical location, sample type, MLST type,...

Additional file 2: of Gene duplications in the E. coli genome: common themes among pathotypes

Manuel Bernabeu (5078432)
José Sánchez-Herrero (6627119)
Pol Huedo (427090)
Alejandro Prieto (5078429)
Mário Hüttener (5078435)
Julio Rozas (42168)
Antonio Juárez (196754)

April 2019

DNA sequences of the genes comprising the three shared families identified in the exclusive core gen...

Additional file 1: Table S1. of Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

Canying Liu (3567590)
Huajun Zheng (38118)
Minjun Yang (120481)
Zhuofei Xu (38107)
Xiangru Wang (3196767)
Liuya Wei (3567596)
Biao Tang (3567593)
Feng Liu (72874)
Yanyan Zhang (1462111)
Yi Ding (172783)
Xibiao Tang (3567599)
Bin Wu (138543)
Timothy Johnson (139876)
Huanchun Chen (38125)
Chen Tan (651657)

September 2015

Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 1: of Genome sequences of two closely related strains of Escherichia coli K-12 GM4792

Yan-Cong Zhang (3495206)
Yan Zhang (8098)
Bi-Ru Zhu (3495203)
Bo-Wen Zhang (849406)
Chuan Ni (238144)
Da-Yong Zhang (16644)
Ying Huang (53474)
Erli Pang (416861)
Kui Lin (16645)

December 2015

Supplementary Tables and Figures. Table S1. Genomic differences between E. coli GM4792 Lac+ and Lac-...

Additional file 3: of High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

BjĂ¸rn-Arne Lindstedt (6032030)
Misti Finton (6032021)
Davide Porcellato (5016440)
Lin Brandal (3571076)

November 2018

FHI-NMBU-03 SNPtree03 slanted. The image shows results from comparing the genome of FHI-NMBU-03 with...

Additional file 1: of Characterization of an NDM-5 carbapenemase-producing Escherichia coli ST156 isolate from a poultry farm in Zhejiang, China

Biao Tang (3567593)
Jiang Chang (119863)
Liujie Cao (6637439)
Qixia Luo (401575)
Hao Xu (6530)
Wentao Lyu (6637442)
Mingrong Qian (413865)
Xiaofeng Ji (331155)
Qiaoyan Zhang (488204)
Xiaodong Xia (1430395)
Hua Yang (120668)

April 2019

Table S1. The gene mutation on the chromosome of strain ECCRA-119. Table S2. Virulence factors of st...

Additional file 1: Table S1. of Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization

Abstract

Extracted data

Additional file 1: Table S1. of Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization

Abstract

Extracted data

Related items

Related items