Figure S1. Core genome-derived phylogeny of 159 E. coli O26 isolates. The phylogram (inferred using the CSIPhylogeny pipeline [59]) represents the full version of contracted phylogram presented in Fig. 1. (PDF 32 kb
FHI-NMBU-03 SNPtree03 slanted. The image shows results from comparing the genome of FHI-NMBU-03 with...
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...
Figure S2. Alignment of all unique Stx2 protein sequences present in the GenBank. Residue A273 is ma...
Table S3. Discrimination of early nEC and late nEC strains by sen/ent SNP-specific PCR, WGS and PFGE...
Metadata and accession numbers of the 69 E. coli strains used for phylogenetic analysis. (XLSX 17Â k...
Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...
Table S2. A pairwise genome comparison matrix of SNP differences for E. coli ST10 clonal complex. (X...
Figure S1. Neighbour-joining tree of ST429 E. coli isolates based on an ad-hoc cgMLST including 2547...
Table S1. Characteristics of 164 CMY-2 -producing Escherichia coli isolates from different sources, ...
Primers of serotype PCR; description: list of primers and sequences used for serotype PCR. (DOCX 17 ...
Table S1. List of E. coli strains whose genomes have been used. Table S2. Distribution of genes from...
Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb
Table S2. Sequence length and location of chromosomal regions in two reference strains exhibiting ho...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
FHI-NMBU-03 SNPtree03 slanted. The image shows results from comparing the genome of FHI-NMBU-03 with...
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...
Figure S2. Alignment of all unique Stx2 protein sequences present in the GenBank. Residue A273 is ma...
Table S3. Discrimination of early nEC and late nEC strains by sen/ent SNP-specific PCR, WGS and PFGE...
Metadata and accession numbers of the 69 E. coli strains used for phylogenetic analysis. (XLSX 17Â k...
Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...
Table S2. A pairwise genome comparison matrix of SNP differences for E. coli ST10 clonal complex. (X...
Figure S1. Neighbour-joining tree of ST429 E. coli isolates based on an ad-hoc cgMLST including 2547...
Table S1. Characteristics of 164 CMY-2 -producing Escherichia coli isolates from different sources, ...
Primers of serotype PCR; description: list of primers and sequences used for serotype PCR. (DOCX 17 ...
Table S1. List of E. coli strains whose genomes have been used. Table S2. Distribution of genes from...
Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb
Table S2. Sequence length and location of chromosomal regions in two reference strains exhibiting ho...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
FHI-NMBU-03 SNPtree03 slanted. The image shows results from comparing the genome of FHI-NMBU-03 with...
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...