Additional file 1: of Genome sequences of two closely related strains of Escherichia coli K-12 GM4792

Supplementary Tables and Figures. Table S1. Genomic differences between E. coli GM4792 Lac+ and Lac- detected via reads mapping with breseq pipeline. Table S2. Structural variations (insertions, deletions) of GM4792 Lac+ compared to MG1655 obtained with Mauve. Table S3. Structural variations (insertions, deletions) of GM4792 Lac- compared to MG1655 obtained with Mauve. Table S4. Nonsynonymous changes in protein sequence of GM4792 Lac+ compared to MG1655 obtained with Mauve. Table S5. Nonsynonymous changes in protein sequence of GM4792 Lac- compared to MG1655 obtained with Mauve. Table S6. 45 complete genomes used in this study. Table S7. The complete set of input parameters used for programs. Figure S1. Scanning-electron micrograph of strain E. coli GM4792 Lac-. Figure S2. Phylogenetic tree inferred from the supermatrix of proteome sequences under the Maximum-likelihood (ML) criterion. Figure S3. Graphical circular map of the chromosome of Escherichia coli K-12 GM4792 Lac-. Figure S4. Mutations related to lactose utilization. (PDF 4042Â kb