Publication date
September 2017
DOIAbstract
RDP database dereplicated, only the V3-V4 region. For use with mg_classifier; metagenomic sequence classifier (https://github.com/GenomicaMicrob/mg_classifier)
RDP database dereplicated, only the V3-V4 region. For use with mg_classifier; metagenomic sequence classifier (https://github.com/GenomicaMicrob/mg_classifier)
<p>Percentage of sequences assigned to each functional subsystem using SEED annotation for nonlithif...
This package installs and interfaces the naive Bayesian classifier for 16S rRNA se-quences developed...
Dataset with sequence and taxonomy information formatted to be used with Metamaps tool and Oxford Na...
The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic pla...
<p>Distribution of bacterial sequences in the RDP database (panel A) and in the activated sludge sub...
16S SSU rRNA sequences from the Genome Taxonomy Database (GTDB release 207) were used to retrain the...
This file repository holds database files to use with the AmpliconTagger pipeline published in GigaS...
Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/) provides the research community with align...
Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. In: Nelso...
Protist Ribosomal Reference database (PR2) reformatted for mg_classifier. <div><br></div><div>pr2_gb...
The Ribosomal Database Project (RDP) compiles ribosomal sequences and related data, and redistribute...
This is the database used by MAGpurify to identify potential contaminants in metagenome-assembled ge...
The Ribosomal Database Project (RDP) is a curated database that offers ribosome data along with rela...
<p>For each of the HMP body regions, the relationship between the average frequency of a given bacte...
<p>Metagenomic analysis of all sequence raw data from the different studied conditions.</p
<p>Percentage of sequences assigned to each functional subsystem using SEED annotation for nonlithif...
This package installs and interfaces the naive Bayesian classifier for 16S rRNA se-quences developed...
Dataset with sequence and taxonomy information formatted to be used with Metamaps tool and Oxford Na...
The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic pla...
<p>Distribution of bacterial sequences in the RDP database (panel A) and in the activated sludge sub...
16S SSU rRNA sequences from the Genome Taxonomy Database (GTDB release 207) were used to retrain the...
This file repository holds database files to use with the AmpliconTagger pipeline published in GigaS...
Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/) provides the research community with align...
Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. In: Nelso...
Protist Ribosomal Reference database (PR2) reformatted for mg_classifier. <div><br></div><div>pr2_gb...
The Ribosomal Database Project (RDP) compiles ribosomal sequences and related data, and redistribute...
This is the database used by MAGpurify to identify potential contaminants in metagenome-assembled ge...
The Ribosomal Database Project (RDP) is a curated database that offers ribosome data along with rela...
<p>For each of the HMP body regions, the relationship between the average frequency of a given bacte...
<p>Metagenomic analysis of all sequence raw data from the different studied conditions.</p
<p>Percentage of sequences assigned to each functional subsystem using SEED annotation for nonlithif...
This package installs and interfaces the naive Bayesian classifier for 16S rRNA se-quences developed...
Dataset with sequence and taxonomy information formatted to be used with Metamaps tool and Oxford Na...
Add to ORKG