This file repository holds database files to use with the AmpliconTagger pipeline published in GigaScience (DOI:10.1093/gigascience/giz146). Among which are the SILVA R128 RDP classifier training sets at genus and species levels
The Ribosomal Database Project (RDP) is a curated database that offers ribosome data along with rela...
The proportion of amplicon sequence variants (ASVs) assigned at a given taxonomic rank using the SIL...
Large-scale comparative and systematic studies rely on the seamless merging of multiple datasets. Ho...
16S SSU rRNA sequences from the Genome Taxonomy Database (GTDB release 207) were used to retrain the...
The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic pla...
This file contains taxonomic assignments for AmpliconNoise-identified OTUs (98% cut-off). Taxonomic ...
These were the files originally used to train the classifier. For reference only. Contains a FASTA...
These were the files originally used to train the classifier. For reference only. Contains a FASTA f...
This package installs and interfaces the naive Bayesian classifier for 16S rRNA se-quences developed...
These are species-level taxonomy classification training sets for the assignTaxonomy function from t...
RDP database dereplicated, only the V3-V4 region. For use with mg_classifier; metagenomic sequence c...
<p>AMPHORA is an Automated Phylogenomic Inference Pipeline for bacterial sequences. From a given a s...
Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/) provides the research community with align...
This project builds on the results of previously funded research by integrating data and software th...
<p>These DADA2-formatted training fastas were derived from the Ribosomal Database Project (RDP Train...
The Ribosomal Database Project (RDP) is a curated database that offers ribosome data along with rela...
The proportion of amplicon sequence variants (ASVs) assigned at a given taxonomic rank using the SIL...
Large-scale comparative and systematic studies rely on the seamless merging of multiple datasets. Ho...
16S SSU rRNA sequences from the Genome Taxonomy Database (GTDB release 207) were used to retrain the...
The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic pla...
This file contains taxonomic assignments for AmpliconNoise-identified OTUs (98% cut-off). Taxonomic ...
These were the files originally used to train the classifier. For reference only. Contains a FASTA...
These were the files originally used to train the classifier. For reference only. Contains a FASTA f...
This package installs and interfaces the naive Bayesian classifier for 16S rRNA se-quences developed...
These are species-level taxonomy classification training sets for the assignTaxonomy function from t...
RDP database dereplicated, only the V3-V4 region. For use with mg_classifier; metagenomic sequence c...
<p>AMPHORA is an Automated Phylogenomic Inference Pipeline for bacterial sequences. From a given a s...
Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/) provides the research community with align...
This project builds on the results of previously funded research by integrating data and software th...
<p>These DADA2-formatted training fastas were derived from the Ribosomal Database Project (RDP Train...
The Ribosomal Database Project (RDP) is a curated database that offers ribosome data along with rela...
The proportion of amplicon sequence variants (ASVs) assigned at a given taxonomic rank using the SIL...
Large-scale comparative and systematic studies rely on the seamless merging of multiple datasets. Ho...
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