Additional file 6: Table S2. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Additional file 1: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

List of variations tested by fixing the effect of the variation in question. (TXT 226 bytes

Additional file 9: of Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Francesco Tiezzi (690603)
Maria Arceo (5049431)
John Cole (392281)
Christian Maltecca (690605)

April 2018

Figure S9. Single-SNP Manhattan plots for the percentage of genetic variance adsorbed for each trait...

Additional file 9 of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA19, −log10(p) values plotted against the genomic positions for each trait. (PNG 456 kb

Additional file 2: Figure S2. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

Distribution of reliabilities of estimated breeding values for calving traits. CEd: Calving ease dir...

Additional file 4: Figure S4. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 3: Figure S3. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 7: Figure S5. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

GWAS for calving ease using stature as a covariate. The red line marks the Bonferroni corrected sign...

Additional file 9: Figure S7. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

Association on BTA19 for stillbirth using only individuals not carrying BH2 (top) or using BH2 carri...

Additional file 1: Table S1. of Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle

Mirjam Frischknecht (392348)
Hubert Pausch (151770)
Beat Bapst (493657)
Heidi Signer-Hasler (164244)
Christine Flury (164251)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Birgit Gredler-Grandl (4584202)

December 2017

Breed codes and number of individuals per breed within the fifth run of the 1000 Bull Genomes Projec...

Additional file 6: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA5, −log10(p) values plotted against the genomic positions for each trait. (PNG 306 kb

Additional file 6: of Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Francesco Tiezzi (690603)
Maria Arceo (5049431)
John Cole (392281)
Christian Maltecca (690605)

April 2018

Figure S6. Single-SNP Manhattan plots for the percentage of genetic variance adsorbed for each trait...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Genome-wide association study in Brown Swiss for fertility traits based on sequence data

Frischknecht, M.
Bapst, B.
Flury, C.
Seefried, F.R.
Signer-Hasler, H.
Garrick, D.
Stricker, C.
Intergenomics, Consortium
Bagnato, A.
Bieber, A.
Fries, R.
Russ, I.
Sölkner, J.
Gredler, B.

January 2016

Fertility in dairy cattle has declined continuously during the last years. In Switzerland low fertil...

Additional file 8: of Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Francesco Tiezzi (690603)
Maria Arceo (5049431)
John Cole (392281)
Christian Maltecca (690605)

April 2018

Figure S8. Single-SNP Manhattan plots for the percentage of genetic variance adsorbed for each trait...

Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS a...

Additional file 1: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

List of variations tested by fixing the effect of the variation in question. (TXT 226 bytes

Additional file 9: of Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Francesco Tiezzi (690603)
Maria Arceo (5049431)
John Cole (392281)
Christian Maltecca (690605)

April 2018

Figure S9. Single-SNP Manhattan plots for the percentage of genetic variance adsorbed for each trait...

Additional file 9 of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA19, −log10(p) values plotted against the genomic positions for each trait. (PNG 456 kb

Additional file 2: Figure S2. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

Distribution of reliabilities of estimated breeding values for calving traits. CEd: Calving ease dir...

Additional file 4: Figure S4. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 3: Figure S3. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

The first two principal coponents for the genomic relationship matrix comprising individuals used fo...

Additional file 7: Figure S5. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

GWAS for calving ease using stature as a covariate. The red line marks the Bonferroni corrected sign...

Additional file 9: Figure S7. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Mirjam Frischknecht (392348)
Beat Bapst (493657)
Franz Seefried (3504269)
Heidi Signer-Hasler (164244)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Ingolf Russ (157518)
Johann SĂślkner (3518465)
Anna Bieber (3188319)
Maria Strillacci (4615399)
Birgit Gredler-Grandl (4584202)
Christine Flury (164251)

November 2017

Association on BTA19 for stillbirth using only individuals not carrying BH2 (top) or using BH2 carri...

Additional file 1: Table S1. of Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle

Mirjam Frischknecht (392348)
Hubert Pausch (151770)
Beat Bapst (493657)
Heidi Signer-Hasler (164244)
Christine Flury (164251)
Dorian Garrick (3572441)
Christian Stricker (166738)
Ruedi Fries (151786)
Birgit Gredler-Grandl (4584202)

December 2017

Breed codes and number of individuals per breed within the fifth run of the 1000 Bull Genomes Projec...

Additional file 6: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA5, −log10(p) values plotted against the genomic positions for each trait. (PNG 306 kb

Additional file 6: of Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Francesco Tiezzi (690603)
Maria Arceo (5049431)
John Cole (392281)
Christian Maltecca (690605)

April 2018

Figure S6. Single-SNP Manhattan plots for the percentage of genetic variance adsorbed for each trait...

Additional file 2: Table S1. of Genome-wide association study for female fertility in Nordic Red cattle

Johanna Höglund (3512930)
Bart Buitenhuis (3404813)
Bernt Guldbrandtsen (340532)
Mogens Lund (3512933)
Goutam Sahana (126076)

September 2015

SNPs significantly associated with Fertility index in the Nordic Red Cattle. A genome wide associati...

Genome-wide association study in Brown Swiss for fertility traits based on sequence data

Frischknecht, M.
Bapst, B.
Flury, C.
Seefried, F.R.
Signer-Hasler, H.
Garrick, D.
Stricker, C.
Intergenomics, Consortium
Bagnato, A.
Bieber, A.
Fries, R.
Russ, I.
Sölkner, J.
Gredler, B.

January 2016

Fertility in dairy cattle has declined continuously during the last years. In Switzerland low fertil...

Additional file 8: of Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Francesco Tiezzi (690603)
Maria Arceo (5049431)
John Cole (392281)
Christian Maltecca (690605)

April 2018

Figure S8. Single-SNP Manhattan plots for the percentage of genetic variance adsorbed for each trait...

Additional file 7: Table S8. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

Shadi Nayeri (3446561)
Mehdi Sargolzaei (551369)
Mohammed Abo-Ismail (3446567)
Natalie May (3446564)
Stephen Miller (2182676)
Flavio Schenkel (598286)
Stephen Moore (233604)
Paul Stothard (5814)

June 2016

Common significant SNPs (genome-wise 1Â % FDR) identified among all fertility related traits (CTFS a...

Additional file 1: of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

List of variations tested by fixing the effect of the variation in question. (TXT 226 bytes

Additional file 9: of Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Francesco Tiezzi (690603)
Maria Arceo (5049431)
John Cole (392281)
Christian Maltecca (690605)

April 2018

Figure S9. Single-SNP Manhattan plots for the percentage of genetic variance adsorbed for each trait...

Additional file 9 of Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

T. Iso-Touru (3409142)
G. Sahana (3409136)
B. Guldbrandtsen (3409133)
M. Lund (3409139)
J. Vilkki (3409145)

March 2016

BTA19, −log10(p) values plotted against the genomic positions for each trait. (PNG 456 kb

Additional file 6: Table S2. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Abstract

Extracted data

Additional file 6: Table S2. of Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences

Abstract

Extracted data

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