When using the directional method with the group command, the 'top' UMI within each group was not always the most abundant (see comments in #96). This has now been resolve
Mainly minor debug and improved detection of incorrect command line options. Minor updates to docume...
Tweaks the way group handles paired end BAMs. To simplify the process and ensure all reads are writt...
Due to a bug in pysam.fetch() paired end files with a large number of contigs could take a long time...
When using the directional method with the group command, the 'top' UMI within each group was not al...
When using the directional method with the group command, the 'top' UMI within each group was not al...
Improves the group command: Adds the --subset option as per the dedup command (#74) Corrects the fl...
Adds the new group command to group PCR duplicates and return the groups in a tagged BAM file and/or...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
Ensures consistent nomenclature for de-duplication methods: 'directional' in place of 'directional-...
New features Adds '--umi-separator' option to umi_tools extract to specify UMI separator. Thanks @o...
Corrects the edit distance comparison used to generate the network for the directional method. This...
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
This release is intended to be a stable release with no plans for significant updates to UMI-tools f...
Added functionality: Deduplicating on gene ids ( #44 for motivation): The user can now group/dedup ...
A long overdue release covering some minor functionality updates and bugfixes: Additional functional...
Mainly minor debug and improved detection of incorrect command line options. Minor updates to docume...
Tweaks the way group handles paired end BAMs. To simplify the process and ensure all reads are writt...
Due to a bug in pysam.fetch() paired end files with a large number of contigs could take a long time...
When using the directional method with the group command, the 'top' UMI within each group was not al...
When using the directional method with the group command, the 'top' UMI within each group was not al...
Improves the group command: Adds the --subset option as per the dedup command (#74) Corrects the fl...
Adds the new group command to group PCR duplicates and return the groups in a tagged BAM file and/or...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
Ensures consistent nomenclature for de-duplication methods: 'directional' in place of 'directional-...
New features Adds '--umi-separator' option to umi_tools extract to specify UMI separator. Thanks @o...
Corrects the edit distance comparison used to generate the network for the directional method. This...
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
This release is intended to be a stable release with no plans for significant updates to UMI-tools f...
Added functionality: Deduplicating on gene ids ( #44 for motivation): The user can now group/dedup ...
A long overdue release covering some minor functionality updates and bugfixes: Additional functional...
Mainly minor debug and improved detection of incorrect command line options. Minor updates to docume...
Tweaks the way group handles paired end BAMs. To simplify the process and ensure all reads are writt...
Due to a bug in pysam.fetch() paired end files with a large number of contigs could take a long time...
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