Improves the group command: Adds the --subset option as per the dedup command (#74) Corrects the flatfile output from the dedup command (#72
Ensures consistent nomenclature for de-duplication methods: 'directional' in place of 'directional-...
The defualt value for --skip_regex was incorrectly formatted. Thanks to @ekernf01 for spotting (#231...
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
Adds the new group command to group PCR duplicates and return the groups in a tagged BAM file and/or...
When using the directional method with the group command, the 'top' UMI within each group was not al...
When using the directional method with the group command, the 'top' UMI within each group was not al...
A long overdue release covering some minor functionality updates and bugfixes: Additional functional...
Added functionality: Deduplicating on gene ids ( #44 for motivation): The user can now group/dedup ...
Added functionality: Deduplicating on gene ids ( #44 for motivation): The user can now group/dedup ...
Debug to support python 3.11. Thank you @sjaenick for bringing this to our attention and testing (#5...
New features Adds '--umi-separator' option to umi_tools extract to specify UMI separator. Thanks @o...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
Corrects the edit distance comparison used to generate the network for the directional method. This...
Debug for KeyError when some reads are missing a cell barode tag and stats output required from umi_...
This release is intended to be a stable release with no plans for significant updates to UMI-tools f...
Ensures consistent nomenclature for de-duplication methods: 'directional' in place of 'directional-...
The defualt value for --skip_regex was incorrectly formatted. Thanks to @ekernf01 for spotting (#231...
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
Adds the new group command to group PCR duplicates and return the groups in a tagged BAM file and/or...
When using the directional method with the group command, the 'top' UMI within each group was not al...
When using the directional method with the group command, the 'top' UMI within each group was not al...
A long overdue release covering some minor functionality updates and bugfixes: Additional functional...
Added functionality: Deduplicating on gene ids ( #44 for motivation): The user can now group/dedup ...
Added functionality: Deduplicating on gene ids ( #44 for motivation): The user can now group/dedup ...
Debug to support python 3.11. Thank you @sjaenick for bringing this to our attention and testing (#5...
New features Adds '--umi-separator' option to umi_tools extract to specify UMI separator. Thanks @o...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
Corrects the edit distance comparison used to generate the network for the directional method. This...
Debug for KeyError when some reads are missing a cell barode tag and stats output required from umi_...
This release is intended to be a stable release with no plans for significant updates to UMI-tools f...
Ensures consistent nomenclature for de-duplication methods: 'directional' in place of 'directional-...
The defualt value for --skip_regex was incorrectly formatted. Thanks to @ekernf01 for spotting (#231...
Improves run time for large networks (see #94, #31). Thanks to @gpratt for identifying the issue and...
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