Publication date
March 2016
DOIAbstract
Removed use of legacy Tabix codebase and switches to samtools 1.2+ Several bugfixes to test case
Removed use of legacy Tabix codebase and switches to samtools 1.2+ Several bugfixes to test case
Re-implemented the main functions to fix bug in the legacy functions. Deprecated the legacy function...
This is a legacy version. It fixes a few minor bugs from v1.3.4. It is recommended if you are curren...
Fixes #46, apparent use of experimental features and/or typos causing issues in perl-5.2
Removed use of legacy Tabix codebase and switches to samtools 1.2+ Switches to github version of vcf...
Migrates all Tabix and Bio::DB::Sam to Bio::DB::HTS::Tabix and Bio::DB::Sam Cleans up install note...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
General cleanup to remove unused and redundant code. General code review and refactoring
Workaround fix for sam files with no reads causing failure in bamsort. This is likely only to occur...
Bugfix whitelist --filtered-out with SE reads threw an unassigned error. Thanks @yech1990 for recti...
Fix compilation issue. Full Changelog: https://github.com/SciQLop/CDFpp/compare/v0.2.2...v0.2.
This release is compatible with pysam-0.10.0 and it is also half way through the upgrade to Python 3...
Cleaned up repository, and updated README to reflect current version of the Samplot-ML workflow
What's Changed Improve topology cleanup https://github.com/Valdes-Tresanco-MS/gmx_MMPBSA/pull/165 ...
Some of the underlying tools don't support CRAM so only removed legacy perl bindings at presen
What's Changed Env var parsing fix and Home Project loading fix by @tomolopolis in https://github.c...
Re-implemented the main functions to fix bug in the legacy functions. Deprecated the legacy function...
This is a legacy version. It fixes a few minor bugs from v1.3.4. It is recommended if you are curren...
Fixes #46, apparent use of experimental features and/or typos causing issues in perl-5.2
Removed use of legacy Tabix codebase and switches to samtools 1.2+ Switches to github version of vcf...
Migrates all Tabix and Bio::DB::Sam to Bio::DB::HTS::Tabix and Bio::DB::Sam Cleans up install note...
The code has been tweaked to improve run-time. See #69 for a discussion about the changes implemente...
General cleanup to remove unused and redundant code. General code review and refactoring
Workaround fix for sam files with no reads causing failure in bamsort. This is likely only to occur...
Bugfix whitelist --filtered-out with SE reads threw an unassigned error. Thanks @yech1990 for recti...
Fix compilation issue. Full Changelog: https://github.com/SciQLop/CDFpp/compare/v0.2.2...v0.2.
This release is compatible with pysam-0.10.0 and it is also half way through the upgrade to Python 3...
Cleaned up repository, and updated README to reflect current version of the Samplot-ML workflow
What's Changed Improve topology cleanup https://github.com/Valdes-Tresanco-MS/gmx_MMPBSA/pull/165 ...
Some of the underlying tools don't support CRAM so only removed legacy perl bindings at presen
What's Changed Env var parsing fix and Home Project loading fix by @tomolopolis in https://github.c...
Re-implemented the main functions to fix bug in the legacy functions. Deprecated the legacy function...
This is a legacy version. It fixes a few minor bugs from v1.3.4. It is recommended if you are curren...
Fixes #46, apparent use of experimental features and/or typos causing issues in perl-5.2
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