Alignment is the fundamental operation used to compare biological sequences. It also serves to identify regions of similarity that are eventually consequences of structural, functional, or evolutionary relationships. Today, the processing of sequences from large DNA or protein databases is a big challenge. Graphics Processing Units (GPUs) are based on a highly parallel, many-core streaming architecture and can be used to tackle the processing of large biological data. In the thesis, progressive alignment methods and their parallel implemenation by modern GPUs are studied. It turns out that wavefront and matrix-matrix product techniques can cope best with the data dependencies and so are highly appropriate for the implementation on a GPU. Th...
In bioinformatics, use of global sequence alignment algorithms such as Needleman-Wunsch (NW) becomes...
Bioinformatics require the analysis of large amounts of data. With the recent advent of next generat...
Bioinformatics require the analysis of large amounts of data. With the recent advent of next generat...
Alignment ist die fundamentale Operation, um biologische Sequenzen zu vergleichen. Dabei geht es dar...
Rapid evolution in sequencing technologies results in generating data on an enormous scale. A focal ...
Alignment algorithms are used to find similarity between biological sequences, such as DNA and prote...
Sequence alignment is a common and often repeated task in molecular biology. Typical alignment opera...
© 2012 Versita Warsaw. Alignment is the fundamental operation in molecular biology for comparing bio...
Continuous technological innovation is enveloping all areas of Information Technology. Among the man...
Rapid evolution in sequencing technologies results in generating data on an enormous scale. A focal ...
Abstract—Pairwise sequence alignment is the method to find the best matching piece for two sequences...
Durch die wachsende Bedeutung der DNS-Sequenzierung wurden die Geräte zur Sequenzierung weiterentwic...
Graphics processor a b s t r a c t Finding regions of similarity between two very long data streams ...
Durch die wachsende Bedeutung der DNS-Sequenzierung wurden die Geräte zur Sequenzierung weiterentwic...
Multiple sequence alignment is a crucial task in a number of biological analyses like secondary stru...
In bioinformatics, use of global sequence alignment algorithms such as Needleman-Wunsch (NW) becomes...
Bioinformatics require the analysis of large amounts of data. With the recent advent of next generat...
Bioinformatics require the analysis of large amounts of data. With the recent advent of next generat...
Alignment ist die fundamentale Operation, um biologische Sequenzen zu vergleichen. Dabei geht es dar...
Rapid evolution in sequencing technologies results in generating data on an enormous scale. A focal ...
Alignment algorithms are used to find similarity between biological sequences, such as DNA and prote...
Sequence alignment is a common and often repeated task in molecular biology. Typical alignment opera...
© 2012 Versita Warsaw. Alignment is the fundamental operation in molecular biology for comparing bio...
Continuous technological innovation is enveloping all areas of Information Technology. Among the man...
Rapid evolution in sequencing technologies results in generating data on an enormous scale. A focal ...
Abstract—Pairwise sequence alignment is the method to find the best matching piece for two sequences...
Durch die wachsende Bedeutung der DNS-Sequenzierung wurden die Geräte zur Sequenzierung weiterentwic...
Graphics processor a b s t r a c t Finding regions of similarity between two very long data streams ...
Durch die wachsende Bedeutung der DNS-Sequenzierung wurden die Geräte zur Sequenzierung weiterentwic...
Multiple sequence alignment is a crucial task in a number of biological analyses like secondary stru...
In bioinformatics, use of global sequence alignment algorithms such as Needleman-Wunsch (NW) becomes...
Bioinformatics require the analysis of large amounts of data. With the recent advent of next generat...
Bioinformatics require the analysis of large amounts of data. With the recent advent of next generat...