Key parts of the semiempirical MOPAC program package have been ported to parallel computers using the MPI message passing-library. Parallel routines are available for the calculation of vibrational frequencies and electrostatic potentials, as well as for energies of large biomolecules via the linear-scaling MOZYME self-consistent-held method. The parallelisation strategies used are discussed, and performance measurements for benchmark calculations on three different parallel computers are presented. Frequency and ESP calculations show good scaling for up to eight nodes, independent of hardware and communications software. MOZYME calculations scale reasonably well if a fast implementation of MPI is available. (C) 2000 Elsevier Science B.V. A...
An introduction to the parallel programming of supercomputers is given. The focus is on the usage of...
Thesis: S.M., Massachusetts Institute of Technology, Department of Nuclear Science and Engineering, ...
A parallel implementation of the conventionally used NDDO (MNDO, AM1, PM3, CLUSTER-Z1) and modified ...
Key parts of the semiempirical MOPAC program package have been ported to parallel computers using th...
The main purpose of parallel processing technology is to reduce the long execution time problem of b...
A parallel realization of the NDDO-WF technique for semi-empirical quantum-chemical calculations on ...
Application of rigorous bounds yields an algorithm approximately linear in the number of primitive G...
In this study, we present some modifications in the semiempirical quantum chemistry MOPAC2009 code t...
Using Amdahl’s law as a metric, the authors illustrate a technique for developing efficient code on ...
Molecular dynamics (MD) is one of the popular applications in the research field of high performance...
Molecular mechanics and dynamics are becoming widely used to perform simulations of molecular system...
This paper discusses the comprehensive performance profiling, improvement, and benchmarking of a Mol...
The strategy and implementation of scalable and efficient semiempirical (SE) QM/MM methods in CHARMM...
OF PAPER Evaluating the Performance of Parallel Programs in a Pseudo-Parallel MPI Environment By Eri...
We have implemented a parallel divide-and-conquer method for semiempirical quantum mechanical calcul...
An introduction to the parallel programming of supercomputers is given. The focus is on the usage of...
Thesis: S.M., Massachusetts Institute of Technology, Department of Nuclear Science and Engineering, ...
A parallel implementation of the conventionally used NDDO (MNDO, AM1, PM3, CLUSTER-Z1) and modified ...
Key parts of the semiempirical MOPAC program package have been ported to parallel computers using th...
The main purpose of parallel processing technology is to reduce the long execution time problem of b...
A parallel realization of the NDDO-WF technique for semi-empirical quantum-chemical calculations on ...
Application of rigorous bounds yields an algorithm approximately linear in the number of primitive G...
In this study, we present some modifications in the semiempirical quantum chemistry MOPAC2009 code t...
Using Amdahl’s law as a metric, the authors illustrate a technique for developing efficient code on ...
Molecular dynamics (MD) is one of the popular applications in the research field of high performance...
Molecular mechanics and dynamics are becoming widely used to perform simulations of molecular system...
This paper discusses the comprehensive performance profiling, improvement, and benchmarking of a Mol...
The strategy and implementation of scalable and efficient semiempirical (SE) QM/MM methods in CHARMM...
OF PAPER Evaluating the Performance of Parallel Programs in a Pseudo-Parallel MPI Environment By Eri...
We have implemented a parallel divide-and-conquer method for semiempirical quantum mechanical calcul...
An introduction to the parallel programming of supercomputers is given. The focus is on the usage of...
Thesis: S.M., Massachusetts Institute of Technology, Department of Nuclear Science and Engineering, ...
A parallel implementation of the conventionally used NDDO (MNDO, AM1, PM3, CLUSTER-Z1) and modified ...