Codes for sequencing data processing
- Zhongmin Dai (1726903)
- Jiahui Lin (193999)
- Jianming Xu (15308)
Publication date
November 2023
DOIAbstract
These codes present how to process the data of amplicon and metagenomics sequencing. </p
These codes present how to process the data of amplicon and metagenomics sequencing. </p
<p>Details of verification using amplicon-based sequencing on the Ion Torrent.</p
<p>Overview of raw sequence read output, processing and annotation of metagenomic profiles.</p
<p>The sequences of the primers used in the amplification of corresponding genes.</p
Processed data and code to generate all main figures and extended data figures for the manuscript "G...
The processing codes used to analyze multiplexed CRISPRi screen data for enhancer interaction
<p>Shell wrapper scripts incorporating multiple programs for i. Formatting a reference genome assemb...
The goal of all sequencing techniques is to provide possible identities for genes, map the entire ge...
<p>Metagenomic analysis of all sequence raw data from the different studied conditions.</p
QIIME2 codes for cyanobacterial 16S-23S rRNA ITS sequence analysis for next generation sequencing d...
The directory 'Bioinformatics' contains the target sequences and code used to process the sequencing...
Bekel T, Henckel K, Küster H, et al. The Sequence Analysis and Management System - SAMS-2.0: Data ma...
<p>Summary of sequencing results from whole genome and exome sequencing data.</p
<p>Target regions are selected and amplicons are designed to cover the region. Amplicons are then pa...
This text file contains a record of the sequence processing steps that were performed on the Strepto...
DNA sequencing technologies address problems, the solutions of which were not possible before, such ...
<p>Details of verification using amplicon-based sequencing on the Ion Torrent.</p
<p>Overview of raw sequence read output, processing and annotation of metagenomic profiles.</p
<p>The sequences of the primers used in the amplification of corresponding genes.</p
Processed data and code to generate all main figures and extended data figures for the manuscript "G...
The processing codes used to analyze multiplexed CRISPRi screen data for enhancer interaction
<p>Shell wrapper scripts incorporating multiple programs for i. Formatting a reference genome assemb...
The goal of all sequencing techniques is to provide possible identities for genes, map the entire ge...
<p>Metagenomic analysis of all sequence raw data from the different studied conditions.</p
QIIME2 codes for cyanobacterial 16S-23S rRNA ITS sequence analysis for next generation sequencing d...
The directory 'Bioinformatics' contains the target sequences and code used to process the sequencing...
Bekel T, Henckel K, Küster H, et al. The Sequence Analysis and Management System - SAMS-2.0: Data ma...
<p>Summary of sequencing results from whole genome and exome sequencing data.</p
<p>Target regions are selected and amplicons are designed to cover the region. Amplicons are then pa...
This text file contains a record of the sequence processing steps that were performed on the Strepto...
DNA sequencing technologies address problems, the solutions of which were not possible before, such ...
<p>Details of verification using amplicon-based sequencing on the Ion Torrent.</p
<p>Overview of raw sequence read output, processing and annotation of metagenomic profiles.</p
<p>The sequences of the primers used in the amplification of corresponding genes.</p
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