Supplementary Table 2 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Supplementary Tables 1 - 4 from Tumor Explants Elucidate a Cascade of Paracrine SHH, WNT, and VEGF Signals Driving Pancreatic Cancer Angiosuppression

Marie C. Hasselluhn (17931772)
Amanda R. Decker-Farrell (17931775)
Lukas Vlahos (17931778)
Dafydd H. Thomas (17931781)
Alvaro Curiel-Garcia (17931784)
H. Carlo Maurer (15014474)
Urszula N. Wasko (17931787)
Lorenzo Tomassoni (17931790)
Stephen A. Sastra (17931793)
Carmine F. Palermo (17931796)
Tanner C. Dalton (17931799)
Alice Ma (17931802)
Fangda Li (17931805)
Ezequiel J. Tolosa (17931808)
Hanina Hibshoosh (15425614)
Martin E. Fernandez-Zapico (16424122)
Alexander Muir (17931811)
Andrea Califano (15018354)
Kenneth P. Olive (15425587)

February 2024

Supplementary Table 1: Raw read counts per gene for bulk RNA-seq IPI-926 intervention study.Raw read...

Circular RNAs as promising biomarkers in cancer: detection, function, and beyond

Shengli Li
Leng Han

March 2019

Editorial summary Circular RNAs (circRNAs) are 3′–5′ covalently closed RNA rings produced from back-...

Table3.XLSX

Weiqin Jiang (2688358)
Xingchen Zhang (3218931)
Qinjie Chu (3218934)
Sen Lu (662866)
Linfu Zhou (4842159)
Xingang Lu (562124)
Chen Liu (75209)
Lingfeng Mao (4842168)
Chuyu Ye (4842165)
Michael P. Timko (4842162)
Longjiang Fan (38057)
Haixing Ju (4842171)

February 2018

<p>Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers...

Supplementary Table 1 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

List of primers designed for Sanger sequencing across the back splicing junctions.</p

Supplementary Fig. 3 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Heatmap and unsupervised hierarchical clustering of normalized nanostring nCounter data from cancer ...

Supplementary Fig. 2 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Tissue markers specificity. Normalized NanoString counts from specific tissue markers used for sub-c...

Supplementary Figure 1 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Evaluation of the most abudant circRNAs from human datasets. Boxplot showing the normalized nCounter...

Supplementary Fig. 6 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Expression levels of MKI67. Measurement of levels of MKI67 by RT-qPCR normalized to MRPL19.</p

Supplementary Fig. 4 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

circRNAs expression patterns from tissue sub-compartments compared to colon cancer cell lines. Nanos...

Supplementary Fig. 9 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Single molecule in situ hybridization for circSLC8A1 in prostate adenocarcinoma. Brightfield microsc...

Supplementary Fig. 8 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Single molecule in situ hybridization for circSLC8A1 in bladder adenocarcinoma. Brightfield and fluo...

Supplementary Fig. 7 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Single molecule in situ hybridization for circITGA7 and circHIPK3 in colon adenocarcinoma and adjace...

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma

Ahmed, Ikhlak
Karedath, Thasni
Andrews, Simeon, S
Al-Azwani, Iman, K
Mohamoud, Yasmin, Ali
Querleu, Denis
Rafii, Arash
Malek, Joel, A

January 2016

International audienceRecently, a class of endogenous species of RNA called circular RNA (circRNA) h...

Additional file 2: of Circular RNA profiling and its potential for esophageal squamous cell cancer diagnosis and prognosis

Liyuan Fan (1944322)
Qiang Cao (119096)
Jia Liu (41593)
Junpeng Zhang (173071)
Baosheng Li (290758)

January 2019

FigureÂ S2. Screening of differentially expressed circRNAs by circRNA microarray and functional anno...

Supplementary Fig. 5 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Analysis of Ki67 staining on colon adenocarcinoma and adjacent normal tissue sections. Representativ...

Supplementary Tables 1 - 4 from Tumor Explants Elucidate a Cascade of Paracrine SHH, WNT, and VEGF Signals Driving Pancreatic Cancer Angiosuppression

Marie C. Hasselluhn (17931772)
Amanda R. Decker-Farrell (17931775)
Lukas Vlahos (17931778)
Dafydd H. Thomas (17931781)
Alvaro Curiel-Garcia (17931784)
H. Carlo Maurer (15014474)
Urszula N. Wasko (17931787)
Lorenzo Tomassoni (17931790)
Stephen A. Sastra (17931793)
Carmine F. Palermo (17931796)
Tanner C. Dalton (17931799)
Alice Ma (17931802)
Fangda Li (17931805)
Ezequiel J. Tolosa (17931808)
Hanina Hibshoosh (15425614)
Martin E. Fernandez-Zapico (16424122)
Alexander Muir (17931811)
Andrea Califano (15018354)
Kenneth P. Olive (15425587)

February 2024

Supplementary Table 1: Raw read counts per gene for bulk RNA-seq IPI-926 intervention study.Raw read...

Circular RNAs as promising biomarkers in cancer: detection, function, and beyond

Shengli Li
Leng Han

March 2019

Editorial summary Circular RNAs (circRNAs) are 3′–5′ covalently closed RNA rings produced from back-...

Table3.XLSX

Weiqin Jiang (2688358)
Xingchen Zhang (3218931)
Qinjie Chu (3218934)
Sen Lu (662866)
Linfu Zhou (4842159)
Xingang Lu (562124)
Chen Liu (75209)
Lingfeng Mao (4842168)
Chuyu Ye (4842165)
Michael P. Timko (4842162)
Longjiang Fan (38057)
Haixing Ju (4842171)

February 2018

<p>Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers...

Supplementary Table 1 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

List of primers designed for Sanger sequencing across the back splicing junctions.</p

Supplementary Fig. 3 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Heatmap and unsupervised hierarchical clustering of normalized nanostring nCounter data from cancer ...

Supplementary Fig. 2 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Tissue markers specificity. Normalized NanoString counts from specific tissue markers used for sub-c...

Supplementary Figure 1 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Evaluation of the most abudant circRNAs from human datasets. Boxplot showing the normalized nCounter...

Supplementary Fig. 6 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Expression levels of MKI67. Measurement of levels of MKI67 by RT-qPCR normalized to MRPL19.</p

Supplementary Fig. 4 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

circRNAs expression patterns from tissue sub-compartments compared to colon cancer cell lines. Nanos...

Supplementary Fig. 9 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Single molecule in situ hybridization for circSLC8A1 in prostate adenocarcinoma. Brightfield microsc...

Supplementary Fig. 8 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Single molecule in situ hybridization for circSLC8A1 in bladder adenocarcinoma. Brightfield and fluo...

Supplementary Fig. 7 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Single molecule in situ hybridization for circITGA7 and circHIPK3 in colon adenocarcinoma and adjace...

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma

Ahmed, Ikhlak
Karedath, Thasni
Andrews, Simeon, S
Al-Azwani, Iman, K
Mohamoud, Yasmin, Ali
Querleu, Denis
Rafii, Arash
Malek, Joel, A

January 2016

International audienceRecently, a class of endogenous species of RNA called circular RNA (circRNA) h...

Additional file 2: of Circular RNA profiling and its potential for esophageal squamous cell cancer diagnosis and prognosis

Liyuan Fan (1944322)
Qiang Cao (119096)
Jia Liu (41593)
Junpeng Zhang (173071)
Baosheng Li (290758)

January 2019

FigureÂ S2. Screening of differentially expressed circRNAs by circRNA microarray and functional anno...

Supplementary Fig. 5 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Juan L. García-Rodríguez (14953383)
Ulrik Korsgaard (17141436)
Ulvi Ahmadov (17141439)
Morten T. Jarlstad Olesen (17141442)
Kim-Gwendolyn Dietrich (17141445)
Emma B. Hansen (17141448)
Stine M. Vissing (17141451)
Benedichte P. Ulhøi (17141454)
Lars Dyrskjøt (15054430)
Karina D. Sørensen (17141457)
Jørgen Kjems (17141460)
Henrik Hager (17141463)
Lasse S. Kristensen (17141466)

October 2023

Analysis of Ki67 staining on colon adenocarcinoma and adjacent normal tissue sections. Representativ...

Supplementary Tables 1 - 4 from Tumor Explants Elucidate a Cascade of Paracrine SHH, WNT, and VEGF Signals Driving Pancreatic Cancer Angiosuppression

Marie C. Hasselluhn (17931772)
Amanda R. Decker-Farrell (17931775)
Lukas Vlahos (17931778)
Dafydd H. Thomas (17931781)
Alvaro Curiel-Garcia (17931784)
H. Carlo Maurer (15014474)
Urszula N. Wasko (17931787)
Lorenzo Tomassoni (17931790)
Stephen A. Sastra (17931793)
Carmine F. Palermo (17931796)
Tanner C. Dalton (17931799)
Alice Ma (17931802)
Fangda Li (17931805)
Ezequiel J. Tolosa (17931808)
Hanina Hibshoosh (15425614)
Martin E. Fernandez-Zapico (16424122)
Alexander Muir (17931811)
Andrea Califano (15018354)
Kenneth P. Olive (15425587)

February 2024

Supplementary Table 1: Raw read counts per gene for bulk RNA-seq IPI-926 intervention study.Raw read...

Circular RNAs as promising biomarkers in cancer: detection, function, and beyond

Shengli Li
Leng Han

March 2019

Editorial summary Circular RNAs (circRNAs) are 3′–5′ covalently closed RNA rings produced from back-...

Table3.XLSX

Weiqin Jiang (2688358)
Xingchen Zhang (3218931)
Qinjie Chu (3218934)
Sen Lu (662866)
Linfu Zhou (4842159)
Xingang Lu (562124)
Chen Liu (75209)
Lingfeng Mao (4842168)
Chuyu Ye (4842165)
Michael P. Timko (4842162)
Longjiang Fan (38057)
Haixing Ju (4842171)

February 2018

<p>Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers...

Supplementary Table 2 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Abstract

Extracted data

Supplementary Table 2 from Spatial Profiling of Circular RNAs in Cancer Reveals High Expression in Muscle and Stromal Cells

Abstract

Extracted data

Related items

Related items