gfaestus is a pangenome graph browser for GFA files. It reads graphs in GFAv1 format, with 2D layouts produced by odgi. The user can interact with the graph nodes, to view the set of paths at each node, or provide overlays which color the nodes based on path depth or sequence features. gfaestus can scale to simultaneously display all the nodes in a whole human pan-chromosome. To link biological features to the graph model, gfaestus uses colors and labels to display path-relative annotations provided in BED format
Ever since Darwin the Tree of Life has provided a framework to study the evolution of organisms. How...
Summary: Sungear is a software system that supports a rapid, visually interactive and biologist-driv...
Biologists pioneering the new field of comparative functional genomics attempt to infer the mechanis...
PGGB builds pangenome variation graphs from a set of input sequences. A pangenome variation graph c...
Low-cost whole-genome assembly has enabled the collection of haplotype-resolved pangenomes for numer...
G-compass: A web-based comparative genome browser between human and other vertebrate genome
International audienceMotivation: Pangenomics evolved since its first applications on bacteria, exte...
We present an interactive web application for visualizing genomic data of prokaryotic chro-mosomes. ...
<p>All known genes for the different disease groups were concurrently analyzed for matching terms in...
Summary: We describe an interactive package that provides graphical overviews of the results of whol...
International audienceA large variety of biological data can be represented by graphs. These graphs ...
Pangenome references address biases of reference genomes by storing a representative set of diverse ...
A Giraffe and a GFA-formatted minigraph assembly of sixteen bread wheat cultivar genome assemblies. ...
GeneNetwork (GN) is a free and open source (FOSS) framework for web-based genetics that can be deplo...
Gravisto, the Graph Visualization Toolkit, is more than a (Java-based) editor for graphs. It include...
Ever since Darwin the Tree of Life has provided a framework to study the evolution of organisms. How...
Summary: Sungear is a software system that supports a rapid, visually interactive and biologist-driv...
Biologists pioneering the new field of comparative functional genomics attempt to infer the mechanis...
PGGB builds pangenome variation graphs from a set of input sequences. A pangenome variation graph c...
Low-cost whole-genome assembly has enabled the collection of haplotype-resolved pangenomes for numer...
G-compass: A web-based comparative genome browser between human and other vertebrate genome
International audienceMotivation: Pangenomics evolved since its first applications on bacteria, exte...
We present an interactive web application for visualizing genomic data of prokaryotic chro-mosomes. ...
<p>All known genes for the different disease groups were concurrently analyzed for matching terms in...
Summary: We describe an interactive package that provides graphical overviews of the results of whol...
International audienceA large variety of biological data can be represented by graphs. These graphs ...
Pangenome references address biases of reference genomes by storing a representative set of diverse ...
A Giraffe and a GFA-formatted minigraph assembly of sixteen bread wheat cultivar genome assemblies. ...
GeneNetwork (GN) is a free and open source (FOSS) framework for web-based genetics that can be deplo...
Gravisto, the Graph Visualization Toolkit, is more than a (Java-based) editor for graphs. It include...
Ever since Darwin the Tree of Life has provided a framework to study the evolution of organisms. How...
Summary: Sungear is a software system that supports a rapid, visually interactive and biologist-driv...
Biologists pioneering the new field of comparative functional genomics attempt to infer the mechanis...