Bread wheat genomes graph pangenome

A Giraffe and a GFA-formatted minigraph assembly of sixteen bread wheat cultivar genome assemblies. 15-wheat10+.bed.gz is the relinearised graph from gfatools gfa2bed 15-wheat10+.gfa.gz is the graph in GFA format as built by minigraph index.min, index.dist, index.giraffe.gbz are the same graph formatted for Giraffe alignments with vg giraffe v1.34.0 or later. vg autoindex -w giraffe -g 15-wheat10+.gfa -t 16 -T ./ -V 1 --target-mem 850G It is possible to convert the gfa graph to vg format: vg convert -v -g 15-wheat10+.gfa > 15-wheat10+.vg To use the index in alignments using vg v1.34.0 or later: vg giraffe -Z index.giraffe.gbz -m index.min -d index.dist -f your_reads.fq > mapped.gamThis work is funded by the Australia Research Council (Projects DP210100296, DP200100762, and DE210100398). This work was supported by resources provided by the Pawsey Supercomputing Centre with funding from the Australian Government and the Government of Western Australia