bcbio/bcbio-nextgen:
- Brad Chapman
- Rory Kirchner
- Lorena Pantano
- Sergey Naumenko
- Matthias De Smet
- Luca Beltrame
- Tetiana Khotiainsteva
- Ilya Sytchev
- Roman Valls Guimera
- John Kern
- Christian Brueffer
- Vlad Savelyev
- Guillermo Carrasco
- Mario Giovacchini
- Miika Ahdesmaki
- Paul Tang
- Sehrish Kanwal
- James J Porter
- Steffen Möller
- Vang Le
- Alexandru Coman
- bogdang989
- Valentine Svensson
- Brent Pedersen
- Jeff Hammerbacher
- Matt Edwards
- Meeta Mistry
- apastore
- Peter Cock
- Joon Yoon
Publication date
December 2021
DOIAbstract
Fix vcf header bug: T/N SAMPLE lines are back - needed for import to SolveBio add strandedness: auto for -l A option in salmon report 10x more peaks in CHIP/ATAC-seq - use 0.05 qvalue fix misleading RNA-seq duplicated reads statistics: thanks @sib-bcf reorganize conda environments snpEff 5.0 strandedness: auto document WGBS pipeline steps make --local an option, not default in bismark alignment - too slow bcbioRNASeq update to 0.3.44 pureCN update to 2.0.1 octopus update to 0.7.
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