IMP: improvements to get-ncbi-data (make more robust to server-side errors, hangups) IMP: Support for SILVA 138.1 IMP: parallelise sequence processing IMP: adds ability to NOT propagate SILVA taxonomy ENH: added filter-taxa method IMP: adds super to dereplicate IMP: additional evaluate CV options README: more tutorials, updates biorxiv preprint citation (README and plugin registration
SILVA (lat. forest) is a comprehensive web resource, providing services around up to date, high-qual...
Parameters: --marker-search-string rbcL OR 'ribulose-1,5-bisphosphate carboxylase/oxygenase large su...
The National Center for Biotechnology Information (NCBI), a division of the National Library of Medi...
ENH: added LSU-138 to get-silva-data by @mikerobeson in https://github.com/bokulich-lab/RESCRIPt/pul...
Adds get_ncbi_data to automatically acquire sequence/taxonomy data from genbank based on a user-defi...
What's Changed ENH: @misialq added a new action for fetching whole genomes and taxonomies from NCBI...
MAINT: update rescript citation to PLoS Comp Bio by @mikerobeson in https://github.com/bokulich-lab/...
What's Changed DEP: Fix joblib for ncbi.py by @mikerobeson in https://github.com/bokulich-lab/RESCR...
Contains a mapping of Genbank accession numbers to NCBI taxon ids and names. The accessions are thos...
This should produce the manuscript that gets submitted for review and is on bioRxi
Ribosomal DNA (rDNA) has become the primary target molecule for phylogenetic reconstruction and the ...
Modified version (blastn ready) of the file SILVA_138.1_SSURef_NR99_tax_silva_trunc.fasta.gz for NGS...
add PLOS Computational Biology paper: https://journals.plos.org/ploscompbiol/article?id=10.1371/jour...
Nucleotide sequence and taxonomy reference databases are critical resources for widespread applicati...
Microbial genome sequence submissions to the International Nucleotide Sequence Database Collaboratio...
SILVA (lat. forest) is a comprehensive web resource, providing services around up to date, high-qual...
Parameters: --marker-search-string rbcL OR 'ribulose-1,5-bisphosphate carboxylase/oxygenase large su...
The National Center for Biotechnology Information (NCBI), a division of the National Library of Medi...
ENH: added LSU-138 to get-silva-data by @mikerobeson in https://github.com/bokulich-lab/RESCRIPt/pul...
Adds get_ncbi_data to automatically acquire sequence/taxonomy data from genbank based on a user-defi...
What's Changed ENH: @misialq added a new action for fetching whole genomes and taxonomies from NCBI...
MAINT: update rescript citation to PLoS Comp Bio by @mikerobeson in https://github.com/bokulich-lab/...
What's Changed DEP: Fix joblib for ncbi.py by @mikerobeson in https://github.com/bokulich-lab/RESCR...
Contains a mapping of Genbank accession numbers to NCBI taxon ids and names. The accessions are thos...
This should produce the manuscript that gets submitted for review and is on bioRxi
Ribosomal DNA (rDNA) has become the primary target molecule for phylogenetic reconstruction and the ...
Modified version (blastn ready) of the file SILVA_138.1_SSURef_NR99_tax_silva_trunc.fasta.gz for NGS...
add PLOS Computational Biology paper: https://journals.plos.org/ploscompbiol/article?id=10.1371/jour...
Nucleotide sequence and taxonomy reference databases are critical resources for widespread applicati...
Microbial genome sequence submissions to the International Nucleotide Sequence Database Collaboratio...
SILVA (lat. forest) is a comprehensive web resource, providing services around up to date, high-qual...
Parameters: --marker-search-string rbcL OR 'ribulose-1,5-bisphosphate carboxylase/oxygenase large su...
The National Center for Biotechnology Information (NCBI), a division of the National Library of Medi...