What's Changed ENH: @misialq added a new action for fetching whole genomes and taxonomies from NCBI databases, get-ncbi-genomes! ENH: @mikerobeson added a new action for getting sequence and taxonomy data from GTDB, get-gtdb-data! MAINT: @mirand863 updated orient-seqs to use VSEARCH orient under the hood for higher efficiency. This has resulted in deprecation of some parameters that are not compatible with orient. Full Changelog: https://github.com/bokulich-lab/RESCRIPt/compare/2023.2.0...2023.5.
What's Changed refactor: update to lastest version of gene-normalizer by @korikuzma in https://gith...
This is our official 3.0 release, that coincides with a complete re-curation of the database to upda...
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, a...
What's Changed DEP: Fix joblib for ncbi.py by @mikerobeson in https://github.com/bokulich-lab/RESCR...
What's Changed Adds reverse complementing to orient-seqs by @jwdebelius in https://github.com/bokul...
Adds get_ncbi_data to automatically acquire sequence/taxonomy data from genbank based on a user-defi...
ENH: added LSU-138 to get-silva-data by @mikerobeson in https://github.com/bokulich-lab/RESCRIPt/pul...
What's New Retrieve the latest taxonomic information from NCBI Retrieve complete taxonomic lineages ...
IMP: improvements to get-ncbi-data (make more robust to server-side errors, hangups) IMP: Support fo...
Version 4.0.5 (Feb 23rd, 2023) Database updates We just released the new vOct22 database Addition o...
What's Changed Citation and doi badge by @MMedzin in https://github.com/MMedzin/clustering-genomic-...
What's Changed Add getting GTDB taxonomic classifications by @HobnobMancer in https://github.com/Ho...
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, a...
What's Changed [MRG] fix identifier munging for local databases by @ctb in https://github.com/dib-l...
This is a re-release 0.3.2 of ncbi-genome-download, to get a Zenodo DOI generated. It's functionally...
What's Changed refactor: update to lastest version of gene-normalizer by @korikuzma in https://gith...
This is our official 3.0 release, that coincides with a complete re-curation of the database to upda...
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, a...
What's Changed DEP: Fix joblib for ncbi.py by @mikerobeson in https://github.com/bokulich-lab/RESCR...
What's Changed Adds reverse complementing to orient-seqs by @jwdebelius in https://github.com/bokul...
Adds get_ncbi_data to automatically acquire sequence/taxonomy data from genbank based on a user-defi...
ENH: added LSU-138 to get-silva-data by @mikerobeson in https://github.com/bokulich-lab/RESCRIPt/pul...
What's New Retrieve the latest taxonomic information from NCBI Retrieve complete taxonomic lineages ...
IMP: improvements to get-ncbi-data (make more robust to server-side errors, hangups) IMP: Support fo...
Version 4.0.5 (Feb 23rd, 2023) Database updates We just released the new vOct22 database Addition o...
What's Changed Citation and doi badge by @MMedzin in https://github.com/MMedzin/clustering-genomic-...
What's Changed Add getting GTDB taxonomic classifications by @HobnobMancer in https://github.com/Ho...
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, a...
What's Changed [MRG] fix identifier munging for local databases by @ctb in https://github.com/dib-l...
This is a re-release 0.3.2 of ncbi-genome-download, to get a Zenodo DOI generated. It's functionally...
What's Changed refactor: update to lastest version of gene-normalizer by @korikuzma in https://gith...
This is our official 3.0 release, that coincides with a complete re-curation of the database to upda...
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, a...