Fixed issues on DNAnexus Upgraded dxWDL to 1.50 (for pipelines >= 1.9.3) Fixed broken genome TSV files on DNAnexus. Fixed GNU sort memory issue
Minor release version-1.0.2 BUG FIXES Fix bug when no NBR fragments are found NEW FEATURES add d...
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
Set ENCODE library complexity flags properly for ChIP-seq. Thanks to @mistrm82. Fix greylisted peaks...
Fixed issues on DNAnexus Upgraded dxWDL to 1.50 (for pipelines >= 1.8.1) Fixed broken genome TSV fil...
Upgraded WDL to 1.0 Added metadata to WDL Removed hacky comments for Caper. meta for general metada...
Updated the default genome TSV file (v3 to v4) in test example input JSON. https://storage.googleap...
-Added a parameter set for ENCODE3 standard -Added genome database (hg38, mm10) for ENCODE3 -TSV gen...
Fixed WDL for Dockstore (DNAnexus, Terra/Anvil) compatibility. Updated documentation and metadata fo...
This pipeline is designed for automated end-to-end quality control and processing of ATAC-seq and DN...
IMPORTANT: Update Caper >= 0.8. ``` $ pip install caper --upgrade ``` IMPORTANT: Conda users must u...
Conda users should re-install pipeline's environment. $ bash scripts/uninstall_conda_env.sh $ bash s...
Fixed Conda libreadline.so.6 issue Show more info in final HTML report Conda users need to update (...
Fixed the issue that test run takes too much resources. Now users can run a test pipeline on a lapto...
Conda users should update pipeline's environment. However, reinstalling is always recommended since ...
Conda users need to re-install pipeline's Conda env. $ bash scripts/uninstall_conda_env.sh $ bash sc...
Minor release version-1.0.2 BUG FIXES Fix bug when no NBR fragments are found NEW FEATURES add d...
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
Set ENCODE library complexity flags properly for ChIP-seq. Thanks to @mistrm82. Fix greylisted peaks...
Fixed issues on DNAnexus Upgraded dxWDL to 1.50 (for pipelines >= 1.8.1) Fixed broken genome TSV fil...
Upgraded WDL to 1.0 Added metadata to WDL Removed hacky comments for Caper. meta for general metada...
Updated the default genome TSV file (v3 to v4) in test example input JSON. https://storage.googleap...
-Added a parameter set for ENCODE3 standard -Added genome database (hg38, mm10) for ENCODE3 -TSV gen...
Fixed WDL for Dockstore (DNAnexus, Terra/Anvil) compatibility. Updated documentation and metadata fo...
This pipeline is designed for automated end-to-end quality control and processing of ATAC-seq and DN...
IMPORTANT: Update Caper >= 0.8. ``` $ pip install caper --upgrade ``` IMPORTANT: Conda users must u...
Conda users should re-install pipeline's environment. $ bash scripts/uninstall_conda_env.sh $ bash s...
Fixed Conda libreadline.so.6 issue Show more info in final HTML report Conda users need to update (...
Fixed the issue that test run takes too much resources. Now users can run a test pipeline on a lapto...
Conda users should update pipeline's environment. However, reinstalling is always recommended since ...
Conda users need to re-install pipeline's Conda env. $ bash scripts/uninstall_conda_env.sh $ bash sc...
Minor release version-1.0.2 BUG FIXES Fix bug when no NBR fragments are found NEW FEATURES add d...
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
Set ENCODE library complexity flags properly for ChIP-seq. Thanks to @mistrm82. Fix greylisted peaks...
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