Fixed the issue that test run takes too much resources. Now users can run a test pipeline on a laptop. Fixed conflicts in Conda installer. Updated documentation: Pipeline still supports Conda as an optional method, DACC will no longer help fixing Conda conflicts on user's computer. If any error occurs, then switch to Singularity method. More comprehensive and simpler and READM
Upgrade Caper to >=2.2.0 for new HPC features. $ pip install caper>=2.2.0 --upgrade Conda environme...
Fixed all Singularity/Conda issuess on HPC backends (slurm, sge, pbs and lsf) Fixes https://github....
New Caper 2.0.0. is out. There is no significant update for cloud-based backends (gcp and aws). Most...
Fixed the issue that test run takes too much resources. Now users can run a test pipeline on a lapto...
Fixed Conda libreadline.so.6 issue Show more info in final HTML report Conda users need to update (...
Conda users must re-install Conda environment. $ scripts/uninstall_conda_env.sh $ scripts/install_co...
Conda users must re-install Conda environment. $ scripts/uninstall_conda_env.sh $ scripts/install_co...
Conda users should re-install pipeline's environment. $ bash scripts/uninstall_conda_env.sh $ bash s...
Conda users should update pipeline's environment. However, reinstalling is always recommended since ...
Conda users need to re-install pipeline's Conda env. $ bash scripts/uninstall_conda_env.sh $ bash sc...
IMPORTANT: Update Caper >= 0.8. ``` $ pip install caper --upgrade ``` IMPORTANT: Conda users must u...
Hotfix for Conda environment error (missing package bedClip). Conda users should re-install pipeline...
Upgrade Caper to the latest >=2.0.0. Old versions of Caper won't work correctly on HPCs. $ pip insta...
Conda users need to update pipeline's Conda env (no re-installation required). $ scripts/update_cond...
Hotfix for Conda environment error (missing package bedClip). Conda users should re-install pipeline...
Upgrade Caper to >=2.2.0 for new HPC features. $ pip install caper>=2.2.0 --upgrade Conda environme...
Fixed all Singularity/Conda issuess on HPC backends (slurm, sge, pbs and lsf) Fixes https://github....
New Caper 2.0.0. is out. There is no significant update for cloud-based backends (gcp and aws). Most...
Fixed the issue that test run takes too much resources. Now users can run a test pipeline on a lapto...
Fixed Conda libreadline.so.6 issue Show more info in final HTML report Conda users need to update (...
Conda users must re-install Conda environment. $ scripts/uninstall_conda_env.sh $ scripts/install_co...
Conda users must re-install Conda environment. $ scripts/uninstall_conda_env.sh $ scripts/install_co...
Conda users should re-install pipeline's environment. $ bash scripts/uninstall_conda_env.sh $ bash s...
Conda users should update pipeline's environment. However, reinstalling is always recommended since ...
Conda users need to re-install pipeline's Conda env. $ bash scripts/uninstall_conda_env.sh $ bash sc...
IMPORTANT: Update Caper >= 0.8. ``` $ pip install caper --upgrade ``` IMPORTANT: Conda users must u...
Hotfix for Conda environment error (missing package bedClip). Conda users should re-install pipeline...
Upgrade Caper to the latest >=2.0.0. Old versions of Caper won't work correctly on HPCs. $ pip insta...
Conda users need to update pipeline's Conda env (no re-installation required). $ scripts/update_cond...
Hotfix for Conda environment error (missing package bedClip). Conda users should re-install pipeline...
Upgrade Caper to >=2.2.0 for new HPC features. $ pip install caper>=2.2.0 --upgrade Conda environme...
Fixed all Singularity/Conda issuess on HPC backends (slurm, sge, pbs and lsf) Fixes https://github....
New Caper 2.0.0. is out. There is no significant update for cloud-based backends (gcp and aws). Most...