Significant bug: FDR control for EdgeR in pair-wise DEG. Previous versions could not properly handle 'Qvalue' and 'IHW' when using EdgeR (There were no issues when 'BH' was selected). In the previous versions, 'BH' was always used as the FDR control method when EdgeR was used, even if 'Qvalue' and 'IHW' were selected. Docker version (ARM): fix bug regarding edgeR in pair-wise DEG. Add new species (117 plants, 70 fungi, and 251 metazoa) Improve GOI profiling in Pair-wise DEG, 3 conditions DEG, and volcano navi. You can select genes by drawing the box on the volcano/scatter plot
<p>The top 10 genes that were retrieved by EdgeR using the R-Cloud on EBI for the LNCaP dataset. Exp...
EdgeR results from unique counts. Differential expression results calculated by edgeR for gene count...
Output from R package DEseq2 for China and Greece H. armigera RNAseq experiments analysing different...
Pair-wise DEG Improve the slider widget for the x-axis and y-axis in the volcano plot. bug fix in b...
To improve the convenience of RNAseqChef, we have created a "summary button" in the setting panel fo...
Add new function: generating report (.docx) when 'download summary' button is pressed in the setting...
Preliminary count data for annotation clustered genes compared between the two species. This informa...
When identifying differentially expressed genes between two conditions using human population RNA-se...
We present a pipeline to identify non-inherited variants from RNA-Sequencing data using software and...
Add approximately 200 non-model organisms. Add new function for the non-model organisms. Related spe...
X-axis is the Gene ID. Y-axis is the fold change in mutant leaves relative to that in wild-type leav...
Background. A number of algorithms exist for analysing RNA-sequencing data to infer profiles of diff...
Ypes among temperate and tropical-clade isolates are shown on top. Black lines indicate lineages tha...
High throughput sequencing technologies are supplanting microarrays as the preferred technology for ...
Added #128 Bump versions to 2.0 #125 Added test_relevel to github tests, added explanation to usage...
<p>The top 10 genes that were retrieved by EdgeR using the R-Cloud on EBI for the LNCaP dataset. Exp...
EdgeR results from unique counts. Differential expression results calculated by edgeR for gene count...
Output from R package DEseq2 for China and Greece H. armigera RNAseq experiments analysing different...
Pair-wise DEG Improve the slider widget for the x-axis and y-axis in the volcano plot. bug fix in b...
To improve the convenience of RNAseqChef, we have created a "summary button" in the setting panel fo...
Add new function: generating report (.docx) when 'download summary' button is pressed in the setting...
Preliminary count data for annotation clustered genes compared between the two species. This informa...
When identifying differentially expressed genes between two conditions using human population RNA-se...
We present a pipeline to identify non-inherited variants from RNA-Sequencing data using software and...
Add approximately 200 non-model organisms. Add new function for the non-model organisms. Related spe...
X-axis is the Gene ID. Y-axis is the fold change in mutant leaves relative to that in wild-type leav...
Background. A number of algorithms exist for analysing RNA-sequencing data to infer profiles of diff...
Ypes among temperate and tropical-clade isolates are shown on top. Black lines indicate lineages tha...
High throughput sequencing technologies are supplanting microarrays as the preferred technology for ...
Added #128 Bump versions to 2.0 #125 Added test_relevel to github tests, added explanation to usage...
<p>The top 10 genes that were retrieved by EdgeR using the R-Cloud on EBI for the LNCaP dataset. Exp...
EdgeR results from unique counts. Differential expression results calculated by edgeR for gene count...
Output from R package DEseq2 for China and Greece H. armigera RNAseq experiments analysing different...