Add approximately 200 non-model organisms. Add new function for the non-model organisms. Related species (Ortholog) can be selected for pathway analysis. Add the function to export and import a Recode.Rdata file in the '3 conditions DEG'. Recode.Rdata can be obtained by clicking the 'Download summary' button and be imported using 'Option: Recode.Rdata' mode. You can skip the time-consuming EBSeq analysis. Add the functions for log2FoldChange cut-off and statistical analysis in the 'Normalized count analysis'. Bug fix. Pathway analysis of non-model organism
Pathway and network approaches are valuable tools in analysis and interpretation of large complex om...
New function 'Correlation analysis' in Normalized count analysis. Enhance usability 'Select sample...
Number of filtered genes = removal of low counts and genes that were undetected by RNAseq. Sanitized...
Pathway Inspector is an easy-to-use web application helping researchers to find patterns of expressi...
Added #128 Bump versions to 2.0 #125 Added test_relevel to github tests, added explanation to usage...
Added Bump versions to 1.3.0dev #74 Add option to provide KEGG pathway blacklist #74 Make quote par...
This vignette describes how to use PathwaySeq to perform accurate statistical pathway analysis on RN...
To improve the convenience of RNAseqChef, we have created a "summary button" in the setting panel fo...
This chapter provides a guide to processing and analyzing RNA-Seq data in a non-model organism. This...
The constant improvement of high-throughput technologies has led to a great increase in generated da...
This is the output of a pipeline that trains a Pathway-Level Information ExtractoR (PLIER) model on ...
Abstract Background Transcriptomic sequencing (RNA-seq) related applications allow for rapid explora...
Description PathwaySeq gives accurate statistical pathway analysis of RNA-Seq data. The R pack-age h...
Complete, fully reproducible phyloseq workflow for microbiome analysis of herbivorous reef fish. Inc...
Output from R package DEseq2 for China and Greece H. armigera RNAseq experiments analysing different...
Pathway and network approaches are valuable tools in analysis and interpretation of large complex om...
New function 'Correlation analysis' in Normalized count analysis. Enhance usability 'Select sample...
Number of filtered genes = removal of low counts and genes that were undetected by RNAseq. Sanitized...
Pathway Inspector is an easy-to-use web application helping researchers to find patterns of expressi...
Added #128 Bump versions to 2.0 #125 Added test_relevel to github tests, added explanation to usage...
Added Bump versions to 1.3.0dev #74 Add option to provide KEGG pathway blacklist #74 Make quote par...
This vignette describes how to use PathwaySeq to perform accurate statistical pathway analysis on RN...
To improve the convenience of RNAseqChef, we have created a "summary button" in the setting panel fo...
This chapter provides a guide to processing and analyzing RNA-Seq data in a non-model organism. This...
The constant improvement of high-throughput technologies has led to a great increase in generated da...
This is the output of a pipeline that trains a Pathway-Level Information ExtractoR (PLIER) model on ...
Abstract Background Transcriptomic sequencing (RNA-seq) related applications allow for rapid explora...
Description PathwaySeq gives accurate statistical pathway analysis of RNA-Seq data. The R pack-age h...
Complete, fully reproducible phyloseq workflow for microbiome analysis of herbivorous reef fish. Inc...
Output from R package DEseq2 for China and Greece H. armigera RNAseq experiments analysing different...
Pathway and network approaches are valuable tools in analysis and interpretation of large complex om...
New function 'Correlation analysis' in Normalized count analysis. Enhance usability 'Select sample...
Number of filtered genes = removal of low counts and genes that were undetected by RNAseq. Sanitized...