Publication date
November 2020
DOIAbstract
Implement several BioPAX L3 classes that the previous version missed Various bug fixes in class inheritance and attributes Implement str/repr for some classe
Implement several BioPAX L3 classes that the previous version missed Various bug fixes in class inheritance and attributes Implement str/repr for some classe
This release increases the required version of libsemigroups to v2.7.1, which contains some bug fixe...
Added Pyramidal saving, optional libvips for increased tile reading performance, and bug fixes
Summary: BioPAX is a community-developed standard language for biological pathway data. A key functi...
Initial release containing An implementation of Python classes representing each BioPAX object type...
What's Changed Add py.typed by @bgyori in https://github.com/indralab/pybiopax/pull/45 Add global t...
What's Changed Add attributes to NucleicAcid reference BioPAX classes by @bgyori in https://github....
Improve the BioPAX object model by implementing Xreffable, Named and Observable as mixin classes. Im...
What's Changed Add functions to get database references from a model by @bgyori in https://github.c...
Generalize the OWL parser to serialization formats that are different from the PathwayCommons conven...
Allow using custom encoding when processing OWL Migrate testing from Travis to GitHub Action
Summary: BioPAX is a community developed standard language for biological pathway data. A key functi...
Export the correct custom XML-base name space associated with a model when serializing into OW
This release accompanies submission to bioRxiv as well as various bugfixes. Updates to documentatio...
Fix bug in parsing of CURIEs deprecate bioregistry.get() in favor of bioregistry.get_resource() Add ...
BioAlignments v2.1.0 Diff since v2.0.1 Closed issues: Lack of an article to cite BioAlignments.jl (...
This release increases the required version of libsemigroups to v2.7.1, which contains some bug fixe...
Added Pyramidal saving, optional libvips for increased tile reading performance, and bug fixes
Summary: BioPAX is a community-developed standard language for biological pathway data. A key functi...
Initial release containing An implementation of Python classes representing each BioPAX object type...
What's Changed Add py.typed by @bgyori in https://github.com/indralab/pybiopax/pull/45 Add global t...
What's Changed Add attributes to NucleicAcid reference BioPAX classes by @bgyori in https://github....
Improve the BioPAX object model by implementing Xreffable, Named and Observable as mixin classes. Im...
What's Changed Add functions to get database references from a model by @bgyori in https://github.c...
Generalize the OWL parser to serialization formats that are different from the PathwayCommons conven...
Allow using custom encoding when processing OWL Migrate testing from Travis to GitHub Action
Summary: BioPAX is a community developed standard language for biological pathway data. A key functi...
Export the correct custom XML-base name space associated with a model when serializing into OW
This release accompanies submission to bioRxiv as well as various bugfixes. Updates to documentatio...
Fix bug in parsing of CURIEs deprecate bioregistry.get() in favor of bioregistry.get_resource() Add ...
BioAlignments v2.1.0 Diff since v2.0.1 Closed issues: Lack of an article to cite BioAlignments.jl (...
This release increases the required version of libsemigroups to v2.7.1, which contains some bug fixe...
Added Pyramidal saving, optional libvips for increased tile reading performance, and bug fixes
Summary: BioPAX is a community-developed standard language for biological pathway data. A key functi...
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