Use local alignment for the iterative mapping mode with bowtie2 Update deprecated sklearn pypi package requirement Update the doc
This release fixes the version mismatch between the release and running kaptive.py --version, but is...
Add option to align DOS to Fermi level (@shyamd) Various bug fixes: Fix many typos. Updates to pape...
Refactored alignment model added BasicPatternAlignmentModel Major cleanup of warnings and possible i...
Fixed a bug that crashed hicstuff view when computing a matrix ratio without using -n and -l. Fixed ...
Make iteralign output name-sorted alignments Make replace all temporary SAM files from iteralign by ...
Fix file extension in hicstuff rebin. Fix incompatibility between lines and trim in hicstuff view. M...
PCR filter now works as expected (removes all fragments with both reads at exact same coordinates ex...
fixes bug in ITK warps pins numpy version in setup.py (was installing older version in some venvs
Add --binning, --zoomify and --balancing arguments to pipeline by @js2264 in https://github.com/kosz...
What's new in v0.1.1 The default mode of alignment has changed from end-to-end (which is still the ...
Fixes an issue causing bowtie 2 to crash when aligning reads using the --fast-local mod
Resolve bug that lost chromosome order when using hicstuff view --region if their names did not foll...
What's Changed Predicate modifier fix by @hrshdhgd in https://github.com/mapping-commons/sssom-py/p...
Full Changelog: https://github.com/mapping-commons/sssom-py/compare/v0.3.20...v0.3.2
Fixed an issue affecting bowtie2 alignment accuracy. Updated the versions of the NCBI NGS and VDB li...
This release fixes the version mismatch between the release and running kaptive.py --version, but is...
Add option to align DOS to Fermi level (@shyamd) Various bug fixes: Fix many typos. Updates to pape...
Refactored alignment model added BasicPatternAlignmentModel Major cleanup of warnings and possible i...
Fixed a bug that crashed hicstuff view when computing a matrix ratio without using -n and -l. Fixed ...
Make iteralign output name-sorted alignments Make replace all temporary SAM files from iteralign by ...
Fix file extension in hicstuff rebin. Fix incompatibility between lines and trim in hicstuff view. M...
PCR filter now works as expected (removes all fragments with both reads at exact same coordinates ex...
fixes bug in ITK warps pins numpy version in setup.py (was installing older version in some venvs
Add --binning, --zoomify and --balancing arguments to pipeline by @js2264 in https://github.com/kosz...
What's new in v0.1.1 The default mode of alignment has changed from end-to-end (which is still the ...
Fixes an issue causing bowtie 2 to crash when aligning reads using the --fast-local mod
Resolve bug that lost chromosome order when using hicstuff view --region if their names did not foll...
What's Changed Predicate modifier fix by @hrshdhgd in https://github.com/mapping-commons/sssom-py/p...
Full Changelog: https://github.com/mapping-commons/sssom-py/compare/v0.3.20...v0.3.2
Fixed an issue affecting bowtie2 alignment accuracy. Updated the versions of the NCBI NGS and VDB li...
This release fixes the version mismatch between the release and running kaptive.py --version, but is...
Add option to align DOS to Fermi level (@shyamd) Various bug fixes: Fix many typos. Updates to pape...
Refactored alignment model added BasicPatternAlignmentModel Major cleanup of warnings and possible i...
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