Fixed a bug that crashed hicstuff view when computing a matrix ratio without using -n and -l. Fixed a bug in hicstuff pipeline that caused some pairs not to be flipped correctly Added support for pairs files as input in hicstuff distancela
Fixing many bugs: A bug in hicDetectLoops if a sub-matrix was very small A bug in hicPlotMatrix if t...
New --min option in hicstuff view to set minimum colorscale value. Modify --max option to support ra...
Fixing a bug in hicHyperoptDetectLoops concerning the validation of the loop locations Fixing a bug ...
When indexing is required, hicstuff pipeline now generates the index in the run's temporary folder t...
Resolve bug that lost chromosome order when using hicstuff view --region if their names did not foll...
Fix file extension in hicstuff rebin. Fix incompatibility between lines and trim in hicstuff view. M...
Add --binning, --zoomify and --balancing arguments to pipeline by @js2264 in https://github.com/kosz...
NEW FEATURE(S): Final pairs file is now sorted and gzipped with pairtools CHANGES: Docker now use...
PCR filter now works as expected (removes all fragments with both reads at exact same coordinates ex...
Improve dockerfile base layer to address compatibility bug with libcrypto. Standardize the format of...
Fix occasional crash due to rounding errors in sparse matrices leading to unequal sparsity between s...
CHANGES: --mat_fmt=cool by default NEW FEATURE(S): by default, an un-binned .cool file is generat...
2 bugs are fixed. -p option made some bugs. toyplot library of stable version has bugs
Version 3.1.3 Check third parties at the beginning of pipeline. Change output file names of hicstuf...
Use local alignment for the iterative mapping mode with bowtie2 Update deprecated sklearn pypi packa...
Fixing many bugs: A bug in hicDetectLoops if a sub-matrix was very small A bug in hicPlotMatrix if t...
New --min option in hicstuff view to set minimum colorscale value. Modify --max option to support ra...
Fixing a bug in hicHyperoptDetectLoops concerning the validation of the loop locations Fixing a bug ...
When indexing is required, hicstuff pipeline now generates the index in the run's temporary folder t...
Resolve bug that lost chromosome order when using hicstuff view --region if their names did not foll...
Fix file extension in hicstuff rebin. Fix incompatibility between lines and trim in hicstuff view. M...
Add --binning, --zoomify and --balancing arguments to pipeline by @js2264 in https://github.com/kosz...
NEW FEATURE(S): Final pairs file is now sorted and gzipped with pairtools CHANGES: Docker now use...
PCR filter now works as expected (removes all fragments with both reads at exact same coordinates ex...
Improve dockerfile base layer to address compatibility bug with libcrypto. Standardize the format of...
Fix occasional crash due to rounding errors in sparse matrices leading to unequal sparsity between s...
CHANGES: --mat_fmt=cool by default NEW FEATURE(S): by default, an un-binned .cool file is generat...
2 bugs are fixed. -p option made some bugs. toyplot library of stable version has bugs
Version 3.1.3 Check third parties at the beginning of pipeline. Change output file names of hicstuf...
Use local alignment for the iterative mapping mode with bowtie2 Update deprecated sklearn pypi packa...
Fixing many bugs: A bug in hicDetectLoops if a sub-matrix was very small A bug in hicPlotMatrix if t...
New --min option in hicstuff view to set minimum colorscale value. Modify --max option to support ra...
Fixing a bug in hicHyperoptDetectLoops concerning the validation of the loop locations Fixing a bug ...
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