This release requires Cellprofiler 4 together with the ImcPluginsCP version > v4.2.1 (https://github.com/BodenmillerGroup/ImcPluginsCP/releases). Further, the example scripts rely on imctools v2. Breaking changes: Imctools v2 changed the naming scheme of files - if you use this version you might need to adapt downstream scripts to the new file naming -> Due to the new naming scheme this also requires the re-conversion of .mcd folders to ome This release adds the following improvements: Updated documentation Adds var_Cells.csv containing metadata for the measurements Adds panel to cpout folde
What's new? The first line of the morphology file now contains information about the version of Isin...
What's Changed Update documentation (#328 and #313) @MarionCoutarel Add max_energy_range_uj to deal...
This is a very small release, which simply contains a few minor modifications to the main CMakeLists...
This is the final release of the ImcSegmentationPipeline repository using imctools v1 and CellProfil...
The git submodules were fixed and docs were appended to indicate restarting of CellProfiler when set...
The pipeline was adjusted to address some of the open issues. In detail the changes can be seen in [...
Relates to the xtiff fix in https://github.com/BodenmillerGroup/xtiff/releases/tag/v0.7.
This repository hosts the results of processing example imaging mass cytometry (IMC) data hosted at ...
Version 0.2 of the Minimum Information About Cell Migration Experiments reporting guideline, develop...
Fix handling of mmcif with empty label_* fields Improve saccharide detection (compare against list f...
This repository demonstrate and documents how the packages imctools, CellProfiler and Ilastik can be...
Original Publication version of code used to calculate CellDRIFT measure. Code contributed to by @cj...
This MCPL version brings several improvements. Improve unit vector packing scheme for higher prec...
Major update Due to increased file size, CL has changed the way it is released, please see internal ...
Summary: this release adds three major features, in addition to a number of bug fixes and other feat...
What's new? The first line of the morphology file now contains information about the version of Isin...
What's Changed Update documentation (#328 and #313) @MarionCoutarel Add max_energy_range_uj to deal...
This is a very small release, which simply contains a few minor modifications to the main CMakeLists...
This is the final release of the ImcSegmentationPipeline repository using imctools v1 and CellProfil...
The git submodules were fixed and docs were appended to indicate restarting of CellProfiler when set...
The pipeline was adjusted to address some of the open issues. In detail the changes can be seen in [...
Relates to the xtiff fix in https://github.com/BodenmillerGroup/xtiff/releases/tag/v0.7.
This repository hosts the results of processing example imaging mass cytometry (IMC) data hosted at ...
Version 0.2 of the Minimum Information About Cell Migration Experiments reporting guideline, develop...
Fix handling of mmcif with empty label_* fields Improve saccharide detection (compare against list f...
This repository demonstrate and documents how the packages imctools, CellProfiler and Ilastik can be...
Original Publication version of code used to calculate CellDRIFT measure. Code contributed to by @cj...
This MCPL version brings several improvements. Improve unit vector packing scheme for higher prec...
Major update Due to increased file size, CL has changed the way it is released, please see internal ...
Summary: this release adds three major features, in addition to a number of bug fixes and other feat...
What's new? The first line of the morphology file now contains information about the version of Isin...
What's Changed Update documentation (#328 and #313) @MarionCoutarel Add max_energy_range_uj to deal...
This is a very small release, which simply contains a few minor modifications to the main CMakeLists...