This repository demonstrate and documents how the packages imctools, CellProfiler and Ilastik can be combined to segment highly multiplexed imaging mass cytometry images into regions corresponding to single cell slices
This repository hosts the results of processing example imaging mass cytometry (IMC) data hosted at ...
This thesis presents numerous automated methods nuclei and cytoplasm segmentation from touching and ...
We propose a novel label fusion technique as well as a crowdsourcing protocol to efficiently obtain ...
This repository hosts the results of processing example imaging mass cytometry (IMC) data hosted at ...
All data supporting the publication: "Multiplexed imaging mass cytometry analysis characterizes the ...
The pipeline was adjusted to address some of the open issues. In detail the changes can be seen in [...
Imaging Mass Cytometry (IMC) is a powerful spatial technology that utilizes Cytometry Time of Flight...
We replaced image denoising and preprocessing with our proposed framework as shown in the red box. A...
Highly multiplexed imaging technologies enable spatial profiling of dozens of biomarkersin situ. Sta...
This repository contains the raw and processed Imaging Mass Cytometry (IMC) data used in the manuscr...
Trained weights of experimental data; Generated simulation results; Ilastik-processed results; Extra...
The paper describes the key component of the Multimodal Cell Analysis approach, a novel cytologic ev...
[1.0.0] - 2020-05-29 Initial release of nf-core/imcyto, created with the nf-core template. Pipeline ...
A new method for segmenting images of immunohistochemically stained cell nuclei is presented. The ai...
MIBI data containing 0.8x0.8mm2 multiplexed images from lymph nodes of multiple patients with melano...
This repository hosts the results of processing example imaging mass cytometry (IMC) data hosted at ...
This thesis presents numerous automated methods nuclei and cytoplasm segmentation from touching and ...
We propose a novel label fusion technique as well as a crowdsourcing protocol to efficiently obtain ...
This repository hosts the results of processing example imaging mass cytometry (IMC) data hosted at ...
All data supporting the publication: "Multiplexed imaging mass cytometry analysis characterizes the ...
The pipeline was adjusted to address some of the open issues. In detail the changes can be seen in [...
Imaging Mass Cytometry (IMC) is a powerful spatial technology that utilizes Cytometry Time of Flight...
We replaced image denoising and preprocessing with our proposed framework as shown in the red box. A...
Highly multiplexed imaging technologies enable spatial profiling of dozens of biomarkersin situ. Sta...
This repository contains the raw and processed Imaging Mass Cytometry (IMC) data used in the manuscr...
Trained weights of experimental data; Generated simulation results; Ilastik-processed results; Extra...
The paper describes the key component of the Multimodal Cell Analysis approach, a novel cytologic ev...
[1.0.0] - 2020-05-29 Initial release of nf-core/imcyto, created with the nf-core template. Pipeline ...
A new method for segmenting images of immunohistochemically stained cell nuclei is presented. The ai...
MIBI data containing 0.8x0.8mm2 multiplexed images from lymph nodes of multiple patients with melano...
This repository hosts the results of processing example imaging mass cytometry (IMC) data hosted at ...
This thesis presents numerous automated methods nuclei and cytoplasm segmentation from touching and ...
We propose a novel label fusion technique as well as a crowdsourcing protocol to efficiently obtain ...
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