updated panaroo-msa to fix bug that caused it to crash when generating the full set of pangenome alignments updated documentation for thresholds which was out of date updated presence absence matrices to include isolate names in header added script to filter presence absence files fixed bug in generation of summary_statistics.txt fil
Bugfix release: fixes co-occurrence matrix computation (important for Haralick features computation)...
Fixed bugs calculating lumped species with some or all missing constituents. Added documentation for...
fixed an issue with PanX export by upgrading TreeTools version, see #52 by @mmolari and @PierreBarra...
Fixes a number of minor issues: Fixes a bug in the post run alignment script panaroo-msa. This was ...
added option to filter annotations that are not compatible with Panaroo due to premature stop codons...
This release fixes some minor bugs including in panaroo-extract-gene Fixes an issue caused by dupli...
This release fixes minor bugs and adds critical new functionality to generate an automatically filte...
This release adds some significant new capabilities to the Panaroo pipeline. adds script to generat...
Adds support for different codon tables Updated panaroo-qc script to include the option not to produ...
bug fixes for the spydrpick script fix for bug caused by case insensitive file labels in some OSX sy...
fixed bug caused by commas in contig names added experimental code to merge graphs and added additio...
Eighth alpha release of the Panoptes 2.0 series. This release adds genotypes and flexible maps, com...
added script panaroo-extract-gene to extract a fasta file given a gene name fix gene sequence prefil...
Bug fixes Factor columns can now have custom names rather than ENV, GEN, and REP only (#2). New fu...
Updated Datasets and Introducing Reports Lineage Cleaning A previous bug resulted in some lineages ...
Bugfix release: fixes co-occurrence matrix computation (important for Haralick features computation)...
Fixed bugs calculating lumped species with some or all missing constituents. Added documentation for...
fixed an issue with PanX export by upgrading TreeTools version, see #52 by @mmolari and @PierreBarra...
Fixes a number of minor issues: Fixes a bug in the post run alignment script panaroo-msa. This was ...
added option to filter annotations that are not compatible with Panaroo due to premature stop codons...
This release fixes some minor bugs including in panaroo-extract-gene Fixes an issue caused by dupli...
This release fixes minor bugs and adds critical new functionality to generate an automatically filte...
This release adds some significant new capabilities to the Panaroo pipeline. adds script to generat...
Adds support for different codon tables Updated panaroo-qc script to include the option not to produ...
bug fixes for the spydrpick script fix for bug caused by case insensitive file labels in some OSX sy...
fixed bug caused by commas in contig names added experimental code to merge graphs and added additio...
Eighth alpha release of the Panoptes 2.0 series. This release adds genotypes and flexible maps, com...
added script panaroo-extract-gene to extract a fasta file given a gene name fix gene sequence prefil...
Bug fixes Factor columns can now have custom names rather than ENV, GEN, and REP only (#2). New fu...
Updated Datasets and Introducing Reports Lineage Cleaning A previous bug resulted in some lineages ...
Bugfix release: fixes co-occurrence matrix computation (important for Haralick features computation)...
Fixed bugs calculating lumped species with some or all missing constituents. Added documentation for...
fixed an issue with PanX export by upgrading TreeTools version, see #52 by @mmolari and @PierreBarra...
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