Eighth alpha release of the Panoptes 2.0 series. This release adds genotypes and flexible maps, completing the the major components. We expect to move to beta for the next release. Breaking changes: Reference summaries are now only supported in the "combined" format. This is in preparation for them to become full tables at a later date. This release includes: Features: #384 - Genotypes channel, with new drawing technique ~20x faster than 1.6.2. #430 - Leaflet based maps, supports flexible map creation in templates and raster layers such as prevalence data #454 - Reinstate ref genome summaries, supporting only the combined data format Fixes: None, feature-focused release. Known issues: Trees cannot be accessed
This release fixes some minor bugs including in panaroo-extract-gene Fixes an issue caused by dupli...
Merge to incorporate Pandeia 2.0. This is a major update that should be done before submitting Cycle...
Horizontal transfer, gene loss, and duplication result in dynamic bacterial genomes shaped by a comp...
Seventh alpha release of the Panoptes 2.0 series. This release introduces pivot tables - a way of s...
Fifth alpha release of the Panoptes 2.0 series. Continuing to redesign and reimplement the UI to re...
This release fixes minor bugs and adds critical new functionality to generate an automatically filte...
This release adds some significant new capabilities to the Panaroo pipeline. adds script to generat...
This is a major feature release. The changes include all those listed for the various release cand...
Motivation: The size and complexity of modern large–scale genome variation studies demand novel appr...
This is the second release of RDA-landscape-genomics. Some changes have been made to the way we ini...
updated panaroo-msa to fix bug that caused it to crash when generating the full set of pangenome ali...
International audienceWe present here FrangiPANe, a pipeline developed to build panreference using s...
Panzea (http://www.panzea.org), the public web site of the project Molecular and Functional Diversit...
International audienceMotivation: Genotyping by sequencing (GBS) generates datasets that are challen...
There has been a new Pandeia data release for 1.4 here. PandExo V1.4 is compatible with this release...
This release fixes some minor bugs including in panaroo-extract-gene Fixes an issue caused by dupli...
Merge to incorporate Pandeia 2.0. This is a major update that should be done before submitting Cycle...
Horizontal transfer, gene loss, and duplication result in dynamic bacterial genomes shaped by a comp...
Seventh alpha release of the Panoptes 2.0 series. This release introduces pivot tables - a way of s...
Fifth alpha release of the Panoptes 2.0 series. Continuing to redesign and reimplement the UI to re...
This release fixes minor bugs and adds critical new functionality to generate an automatically filte...
This release adds some significant new capabilities to the Panaroo pipeline. adds script to generat...
This is a major feature release. The changes include all those listed for the various release cand...
Motivation: The size and complexity of modern large–scale genome variation studies demand novel appr...
This is the second release of RDA-landscape-genomics. Some changes have been made to the way we ini...
updated panaroo-msa to fix bug that caused it to crash when generating the full set of pangenome ali...
International audienceWe present here FrangiPANe, a pipeline developed to build panreference using s...
Panzea (http://www.panzea.org), the public web site of the project Molecular and Functional Diversit...
International audienceMotivation: Genotyping by sequencing (GBS) generates datasets that are challen...
There has been a new Pandeia data release for 1.4 here. PandExo V1.4 is compatible with this release...
This release fixes some minor bugs including in panaroo-extract-gene Fixes an issue caused by dupli...
Merge to incorporate Pandeia 2.0. This is a major update that should be done before submitting Cycle...
Horizontal transfer, gene loss, and duplication result in dynamic bacterial genomes shaped by a comp...